CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g38030

Gene name MATE efflux family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g38030 833782 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM S.X. H.G.
1.00 100.0 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. S.X. H.G.
0.86 93.1 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
0.86 93.1 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
0.75 86.9 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
99.0 99.9 GSM270870 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
88.9 99.9 GSM270868 Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
76.8 99.9 GSM131573 ATGE_99_A GSE5631 AtGenExpress: Developmental series (roots)
70.1 99.9 GSM131575 ATGE_99_C GSE5631 AtGenExpress: Developmental series (roots)
61.4 99.8 GSM131574 ATGE_99_B GSE5631 AtGenExpress: Developmental series (roots)
59.5 99.8 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
53.2 99.8 GSM133121 S0_12H_A GSE5688 AtGenExpress: Response to sulfate limitation
52.0 99.8 GSM131572 ATGE_98_C GSE5631 AtGenExpress: Developmental series (roots)
51.0 99.8 GSM131571 ATGE_98_B GSE5631 AtGenExpress: Developmental series (roots)
49.8 99.8 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.86 0 1610 At3g26590 822267 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, vacuole, membrane;BOPFAM C.G. S.X.
0.50 6e-63 242 At1g12950 837853 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA C.G. S.X.
0.04 3e-9 63 At5g65380 836663 ripening-responsive protein, putative F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport, ripening;C:membrane;BPOFMA C.G. S.X.
0.04 3e-9 63 At4g00350 827306 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA C.G. S.X.
0.08 2e-7 57 At1g23300 838939 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA C.G. S.X.
0.06 1e-5 52 At1g11670 837711 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:N-terminal protein myristoylation, multidrug transport;C:membrane;BOPFAM C.G. S.X.
0.06 3e-3 44 At1g61890 842485 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA C.G. S.X.
0.03 5e-2 40 At5g44050 834428 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA C.G. S.X.
0.02 2e-1 38 At5g37520 833730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-14 79 Glycine max GmaAffx.24367.1.A1_at BU545255 - - 2e-21 At1g12950 MATE efflux family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HVSMEl0020G17r2_x_at HVSMEl0020G17r2 - - 2e+0 At1g69180 CRC (CRABS CLAW) C.G. S.X.
0.03 2e+0 36 Oryza sativa OsAffx.24286.1.S1_at - - - 0 C.G. S.X.
0.05 2e-2 42 Populus trichocarpa PtpAffx.224348.1.S1_at pmrna42814 - - 4e-21 At1g61890 MATE efflux family protein C.G. S.X.
0.02 8e-1 36 Triticum aestivum Ta.1621.1.A1_at BJ284076 - - 3e-3 At1g11670 MATE efflux family protein C.G. S.X.
0.05 1e-3 44 Vitis vinifera 1621987_at CA818803 hypothetical protein LOC100262309 - 9e-15 At1g11670 MATE efflux family protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.6703.1.A1_at CA398710 hypothetical protein LOC100273224 - 1e+0 At2g01120 ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009624 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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