CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g37990

Gene name S-adenosylmethionine-dependent methyltransferase/ methyltransferase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.28 30.3 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF S.X. H.G.
0.40 50.8 At2g18370 816352 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.40 50.8 At3g58550 825024 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P S.X. H.G.
0.20 14.4 At4g28940 829015 catalytic F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO S.X. H.G.
0.17 10.2 At1g78990 844239 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
125.1 99.9 GSM291114 root - 21% oxygen - 30min - G GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
114.5 99.9 GSM131574 ATGE_99_B GSE5631 AtGenExpress: Developmental series (roots)
103.2 99.9 GSM291023 root - 08% oxygen - 30min - G GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
92.1 99.9 GSM131350 AtGen_6-4422_Droughtstress-Roots-6.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
91.4 99.9 GSM131575 ATGE_99_C GSE5631 AtGenExpress: Developmental series (roots)
90.8 99.9 GSM131354 AtGen_6-4522_Droughtstress-Roots-12.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
85.3 99.9 GSM131573 ATGE_99_A GSE5631 AtGenExpress: Developmental series (roots)
73.4 99.9 GSM131572 ATGE_98_C GSE5631 AtGenExpress: Developmental series (roots)
73.3 99.9 GSM131353 AtGen_6-4521_Droughtstress-Roots-12.0h_Rep1 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
60.5 99.8 GSM131571 ATGE_98_B GSE5631 AtGenExpress: Developmental series (roots)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.88 0 1249 At5g37970 833776 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:unknown;POBMF C.G. S.X.
0.48 2e-40 167 At5g38780 833869 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF C.G. S.X.
0.41 4e-33 143 At5g38100 833790 methyltransferase-related F:methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF C.G. S.X.
0.04 4e-5 50 At3g44860 823620 FAMT (farnesoic acid carboxyl-O-methyltransferase) Encodes a farnesoic acid carboxyl-O-methyltransferase. C.G. S.X.
0.04 6e-4 46 At3g44870 823621 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF C.G. S.X.
0.02 4e-2 40 At3g48040 823959 ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif. It is localized to the plasma membrane and involved in the negative regulation of ABA signalling. C.G. S.X.
0.01 2e-1 38 At5g15070 831359 acid phosphatase/ oxidoreductase/ transition metal ion binding F:oxidoreductase activity, transition metal ion binding, acid phosphatase activity;P:unknown;C:cellular_component unknown;MFOPB C.G. S.X.
0.01 6e-1 36 At4g30991 - C.G. S.X.
0.01 6e-1 36 At4g38030 829959 lyase F:lyase activity;P:unknown;C:endomembrane system;PFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 40 Glycine max Gma.7420.2.S1_a_at AI460913 - - 3e-56 At1g17370 UBP1B (oligouridylate binding protein 1B) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig10835_at Contig10835 - - 1e+0 At1g77530 O-methyltransferase family 2 protein C.G. S.X.
0.02 5e+0 34 Oryza sativa OsAffx.25185.1.S1_at - - - 0 C.G. S.X.
0.05 9e-4 46 Populus trichocarpa PtpAffx.202596.1.S1_s_at pmrna5196 hypothetical protein - 2e-1 At1g66700 PXMT1 C.G. S.X.
0.02 6e-1 36 Triticum aestivum Ta.7148.1.S1_at CK162764 - - 6e+0 At5g04840 bZIP protein C.G. S.X.
0.03 7e-1 34 Vitis vinifera 1616491_at CF204096.1 - - 9e-1 At5g06290 2-Cys Prx B (2-Cysteine peroxiredoxin B) C.G. S.X.
0.02 4e+0 32 Zea mays Zm.5197.1.A1_at AI612383 - - 3e+0 At5g37990 S-adenosylmethionine-dependent methyltransferase/ methyltransferase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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