Gene omics information

Query gene ID At5g37860
Gene name copper-binding family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g37860833764copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;POBFMS.X.H.G.
0.8994.6At2g13640815849Golgi GDP mannose transporter (GONST1)F:unknown;P:transcription;C:nucleus;OMBPFVAS.X.H.G.
0.8491.9At5g44330834458male sterility MS5 family proteinF:binding;P:biological_process unknown;C:unknown;POBAS.X.H.G.
0.8290.9At3g28280822454-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7989.1At1g11690837713unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.7989.1At1g33820840277unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPS.X.H.G.
0.7788.0At4g25510828655unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7687.4At1g18050838385SWAP (Suppressor-of-White-APricot)/surp domain-containing proteinF:RNA binding;P:RNA processing;C:cellular_component unknown;MPOFS.X.H.G.
0.7486.1At1g29730839851ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.7486.1At4g02970828121AT7SL-1 (Arabidopsis 7SL RNA 1)Signal recognition particle. Type 4 of RNA polymerase III dependent genes.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
415.7100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
391.5100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
386.8100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
362.2100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
359.6100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
317.2100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
308.8100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
278.7100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
254.1100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
243.6100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-138At3g05220819686heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:unknown;MOBPFVAC.G.S.X.
0.024e-136At5g54190835507PORAlight-dependent NADPH:protochlorophyllide oxidoreductase AC.G.S.X.
0.024e-136At4g17350827447phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFOC.G.S.X.
0.014e-136At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.022e+034At5g37890833768seven in absentia (SINA) protein, putativeF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus, intracellular;MPOFC.G.S.X.
0.012e+034At5g13400831181proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFC.G.S.X.
0.012e+034At5g56780835780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.075e-136Glycine maxGmaAffx.54678.1.S1_atBG881586--8e-7At1g23000heavy-metal-associated domain-containing proteinC.G.S.X.
0.027e-134Hordeum vulgareContig14570_atContig14570aldehyde decarbonylase enzyme CER1;1-like-5e+0At5g07100WRKY26C.G.S.X.
0.021e+132Oryza sativaOsAffx.3621.1.S1_at---0C.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.220695.1.S1_atpmrna37107hypothetical protein-8e-1At2g01710DNAJ heat shock N-terminal domain-containing proteinC.G.S.X.
0.034e-136Triticum aestivumTa.26691.1.A1_atCD491588--3e-1At5g37860copper-binding family proteinC.G.S.X.
0.033e-238Vitis vinifera1614397_atCD004436hypothetical protein LOC100257527-2e-12At4g12280copper amine oxidase family proteinC.G.S.X.
0.037e-134Zea maysZm.4998.1.A1_atAI600277acetyltransferase, GNAT family protein-3e+0At1g19910AVA-P2C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006825The directed movement of copper (Cu) ions into, out of, within or between cells.
LGO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage