CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g37780

Gene name CAM1 (CALMODULIN 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g37780 833756 CAM1 (CALMODULIN 1) encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness. S.X. H.G.
0.40 50.8 At1g22300 838837 GRF10 (GENERAL REGULATORY FACTOR 10) Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 S.X. H.G.
0.40 50.8 At1g66410 842959 CAM4 (calmodulin 4) encodes a calmodulin S.X. H.G.
0.35 41.6 At3g50860 824250 clathrin adaptor complex small chain family protein F:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MFOP S.X. H.G.
0.35 41.6 At4g24210 828522 SLY1 (SLEEPY1) F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins. S.X. H.G.
0.34 39.8 At1g29990 839878 PDF6 (PREFOLDIN 6) Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins. S.X. H.G.
0.34 39.8 At3g59920 825162 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) RAB GDP DISSOCIATION INHIBITOR 2 S.X. H.G.
0.30 32.1 At5g27720 832834 emb1644 (embryo defective 1644) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPBV S.X. H.G.
0.29 30.3 At1g03150 839562 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MBOFAP S.X. H.G.
0.29 30.3 At2g18040 816316 PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
33.0 99.7 Capper_1-1_A3_estradiol
11.5 99.3 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
10.6 99.2 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
10.5 99.2 GSM218589 Protoplasted root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.4 99.2 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.3 99.1 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
8.7 99.0 GSM218590 Protoplasted root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.1 98.9 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
7.7 98.9 GSM218588 Protoplasted root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
7.5 98.8 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.90 5e-147 519 At1g66410 842959 CAM4 (calmodulin 4) encodes a calmodulin C.G. S.X.
0.86 1e-113 408 At2g27030 817245 CAM5 (CALMODULIN 5) encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. C.G. S.X.
0.86 8e-109 393 At3g56800 824847 CAM3 (CALMODULIN 3) encodes a calmodulin C.G. S.X.
0.85 1e-101 369 At2g41110 818710 CAM2 (CALMODULIN 2) Encodes a touch-inducible calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. C.G. S.X.
0.85 7e-97 353 At5g21274 832245 CAM6 (CALMODULIN 6) Encodes a calmodulin isoform. Expressed in leaves. C.G. S.X.
0.85 7e-97 353 At3g43810 823492 CAM7 (CALMODULIN 7) EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant. C.G. S.X.
0.28 6e-8 57 At3g22930 821865 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.75 1e-89 329 Glycine max GmaAffx.92868.1.S1_s_at CF808593 calmodulin - 2e-94 At3g56800 CAM3 (CALMODULIN 3) C.G. S.X.
0.62 7e-83 305 Hordeum vulgare Contig1328_s_at Contig1328 - - 3e-82 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
0.80 1e-93 343 Oryza sativa Os07g0687200 AF441191.1 - Calmodulin (CaM) (BC329) 2e-108 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
0.69 3e-69 262 Populus trichocarpa Ptp.1551.2.S1_at BU882242 hypothetical protein - 6e-98 At5g21274 CAM6 (CALMODULIN 6) C.G. S.X.
0.53 1e-83 309 Triticum aestivum Ta.5403.1.S1_at BJ298697 calmodulin TaCaM4-1 - 2e-83 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
0.51 4e-83 305 Vitis vinifera 1610944_at BQ794641 hypothetical protein LOC100261610 - 1e-103 At5g21274 CAM6 (CALMODULIN 6) C.G. S.X.
0.55 1e-78 291 Zea mays Zm.352.1.S1_at AF031482.1 calmodulin - 5e-90 At3g56800 CAM3 (CALMODULIN 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009612 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
C GO:0005513 The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04070 Phosphatidylinositol signaling system
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