Gene omics information

Query gene ID At5g37680
Gene name ATARLA1A (ADP-ribosylation factor-like A1A)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g37680833747ATARLA1A (ADP-ribosylation factor-like A1A)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARL GTPases.S.X.H.G.
0.3541.6At1g05070839330unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PBOS.X.H.G.
0.3235.7At1g31500840040endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
0.3133.8At3g24030821988hydroxyethylthiazole kinase family proteinF:catalytic activity, hydroxyethylthiazole kinase activity;P:thiamin biosynthetic process;C:cellular_component unknown;BOFAPMS.X.H.G.
0.3032.1At3g12210820401sequence-specific DNA bindingF:sequence-specific DNA binding;P:biological_process unknown;C:intracellular;MFPOAS.X.H.G.
0.2930.3At4g14190827059-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFAS.X.H.G.
0.2830.3At1g74530843794unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.2726.2At5g49230834983HRB1 (HYPERSENSITIVE TO RED AND BLUE)Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.S.X.H.G.
0.2624.4At5g06060830493tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVS.X.H.G.
0.2217.5At2g31450817703endonuclease-relatedF:4 iron, 4 sulfur cluster binding, sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:intracellular;BOAMFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
107.899.9GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
66.799.8GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
39.099.8GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
30.599.7GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
25.999.7GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
21.299.6GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
9.899.1GSM133827Walters_A-06-Kruger-WH3_REP3GSE5737Carbohydrate- and redox-regulation of gene expression in a TPT mutant
9.499.1GSM62694Columbia flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expression
8.999.0GSM133776Lindsey_1-1_globular-apical_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.899.0GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.342e-42173At3g49870824149ATARLA1C (ADP-ribosylation factor-like A1C)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.C.G.S.X.
0.434e-25115At5g67560836892ATARLA1D (ADP-ribosylation factor-like A1D)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.C.G.S.X.
0.281e-1893At3g49860824148ATARLA1B (ADP-ribosylation factor-like A1B)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.C.G.S.X.
0.022e-240At2g39350818520ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPVC.G.S.X.
0.023e-136At5g633808364574-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.C.G.S.X.
0.013e-136At3g48470824006EMB2423 (EMBRYO DEFECTIVE 2423)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFPOC.G.S.X.
0.023e-136At3g50660824229DWF4 (DWARF 4)Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.C.G.S.X.
0.011e+034At5g14580831309polyribonucleotide nucleotidyltransferase, putativeF:polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding;P:mRNA catabolic process, RNA processing;C:unknown;BOMPAFC.G.S.X.
0.021e+034At5g58782835993dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.371e-38161Glycine maxGma.7813.2.S1_atBE660328--6e-76At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)C.G.S.X.
0.556e-56216Hordeum vulgareContig9022_atContig9022--2e-55At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)C.G.S.X.
0.553e-58226Oryza sativaOs02g0732500AK111722.1-ADP-ribosylation factor-like protein2e-58At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)C.G.S.X.
0.483e-60232Populus trichocarpaPtp.4752.1.S1_atCV275199hypothetical protein-5e-60At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)C.G.S.X.
0.381e-31137Triticum aestivumTa.3262.1.S1_atBQ806543k12B20.15 protein-2e-31At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)C.G.S.X.
0.242e-21101Vitis vinifera1619019_atCF213490hypothetical protein LOC100243336-2e-102At5g67560ATARLA1D (ADP-ribosylation factor-like A1D)C.G.S.X.
0.575e-47186Zea maysZm.7976.1.S1_atBM080696hypothetical protein LOC100217261-2e-46At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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