Gene omics information

Query gene ID At5g37490
Gene name U-box domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At5g37490833727U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVS.X.H.G.
0.6882.2At4g14455827091ATBET12Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi.S.X.H.G.
0.6075.7At2g40740818669WRKY55member of WRKY Transcription Factor; Group IIIS.X.H.G.
0.5974.7At1g07160837227protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:chloroplast, protein serine/threonine phosphatase complex;MPOFBVAS.X.H.G.
0.5773.8At5g47850834836CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4)F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.5673.0At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVS.X.H.G.
0.5570.6At2g23270816859unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.5570.6At5g05300830412unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.5368.6At1g72950843626disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBMS.X.H.G.
0.5166.3At1g16090838179WAKL7 (wall associated kinase-like 7)WAK-like kinaseS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
966.8100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
762.2100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
536.9100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
359.1100.0GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
282.8100.0E-MEXP-807-raw-cel-1173273252
219.4100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
115.499.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
108.099.9E-MEXP-807-raw-cel-1173273144
89.799.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
66.299.8E-MEXP-807-raw-cel-1173273170
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.222e-1067At1g66160842931U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVC.G.S.X.
0.024e-240At4g21020827849late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVAC.G.S.X.
0.026e-136At2g02400814771cinnamoyl-CoA reductase familyF:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:plasma membrane;BOPFMAVC.G.S.X.
0.026e-136At1g12490837806F-box family protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.013e+034At5g15400831392U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;MFOPC.G.S.X.
0.023e+034At5g01570830357unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBFC.G.S.X.
0.013e+034At4g30190829142AHA2belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal domC.G.S.X.
0.013e+034At4g01010826427ATCNGC13member of Cyclic nucleotide gated channel familyC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-242Glycine maxGmaAffx.61790.1.S1_atAI966188--1e-3At3g52450PUB22 (PLANT U-BOX 22)C.G.S.X.
0.025e+032Hordeum vulgareHA14I17r_atHA14I17r--3e+0Atmg01110-C.G.S.X.
0.021e+036Oryza sativaOs02g0689700AK072634.1-Ribosomal protein L18P/L5E family protein3e-5At3g2023050S ribosomal protein L18 familyC.G.S.X.
0.024e+034Populus trichocarpaPtpAffx.26405.2.A1_atBP935671f-box family protein /// hypothetical protein /// f-box family protein-8e-11At1g25280AtTLP10 (TUBBY LIKE PROTEIN 10)C.G.S.X.
0.027e-136Triticum aestivumTa.15539.1.S1_atCA486682--4e-3At3g42050vacuolar ATP synthase subunit H family proteinC.G.S.X.
0.023e+032Vitis vinifera1608976_atBQ795295hypothetical protein LOC100256742-8e-1Atmg01230-C.G.S.X.
0.022e+130Zea maysZmAffx.939.1.A1_atAI820322--9e-16At5g15400U-box domain-containing proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage