CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g37450

Gene name leucine-rich repeat transmembrane protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g37450 833722 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.94 96.7 At1g70880 843425 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.90 95.1 At1g33840 840280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.90 95.1 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.90 95.1 At5g04730 830351 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.86 93.1 At1g08090 837327 ATNRT2:1 (NITRATE TRANSPORTER 2:1) High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. S.X. H.G.
0.86 93.1 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. S.X. H.G.
0.75 86.9 At5g52350 835311 ATEXO70A3 (exocyst subunit EXO70 family protein A3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.72 84.8 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA S.X. H.G.
0.68 82.2 At1g11540 837697 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBAP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
303.3 100.0 E-MEXP-828-raw-cel-1156922829
237.8 100.0 E-MEXP-828-raw-cel-1156922684
213.9 100.0 E-MEXP-828-raw-cel-1156922368
192.0 100.0 E-MEXP-828-raw-cel-1156922794
179.2 100.0 E-MEXP-828-raw-cel-1156922772
169.9 100.0 E-MEXP-828-raw-cel-1156922708
167.1 100.0 E-MEXP-828-raw-cel-1156922923
163.9 99.9 E-MEXP-828-raw-cel-1156922905
161.3 99.9 E-MEXP-828-raw-cel-1156922750
149.0 99.9 E-MEXP-828-raw-cel-1156922342
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-8 61 At4g04490 825779 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.04 2e-8 61 At1g06840 837196 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA C.G. S.X.
0.01 4e-7 57 At4g04510 825781 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.03 4e-7 57 At3g53590 824527 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.02 1e-3 46 At4g04540 825785 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 1e-3 46 At4g04500 825780 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 6e-3 44 At1g16130 838182 WAKL2 (wall associated kinase-like 2) wall-associated kinase like C.G. S.X.
0.01 2e-2 42 At5g20480 832170 EFR (EF-TU RECEPTOR) Encodes a predicted leucine-rich repeat receptor kinase (LRR-RLK). Functions as the receptor for bacterial PAMP (pathogen associated molecular patterns) EF-Tu. C.G. S.X.
0.01 2e-2 42 At4g31100 829237 wall-associated kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 40 Glycine max GmaAffx.55211.2.S1_at BI471529 - - 3e-9 At1g79680 wall-associated kinase, putative C.G. S.X.
0.01 2e-1 38 Hordeum vulgare Contig11925_at Contig11925 - - 2e-40 At2g30740 serine/threonine protein kinase, putative C.G. S.X.
0.04 3e-12 75 Oryza sativa Os01g0960400 AK111991.1 - Protein kinase domain containing protein 5e-9 At1g06840 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.06 2e-9 65 Populus trichocarpa PtpAffx.213740.1.S1_at pmrna26823 hypothetical protein - 2e-8 At1g06840 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.03 7e-9 63 Triticum aestivum Ta.21535.1.S1_at CA695577 - - 2e-9 At5g37450 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1621568_at CF415414 hypothetical protein LOC100252433 - 1e+0 At2g07721 unknown protein C.G. S.X.
0.02 2e+0 34 Zea mays ZmAffx.848.1.A1_at AI770631 - - 8e-1 At1g22720 wall-associated kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006468 The process of introducing a phosphate group on to a protein.
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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