Gene omics information

Query gene ID At5g36670
Gene name PHD finger family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7687.4At5g36670833632PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOPFBVS.X.H.G.
0.8089.8At1g34460840348CYCB1B1 type cyclinS.X.H.G.
0.7184.2At2g36200818192kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAVS.X.H.G.
0.6982.9At4g02060828153PRL (PROLIFERA)Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.S.X.H.G.
0.6781.6At2g29890817539VLN1 (VILLIN-LIKE 1)Encodes a ubiquitously expressed villin-like protein, whose mRNA may be alternatively processed. Villin belongs to a superfamily of actin binding proteins called the villin/gelsolin family. Animal villins are involved in actin binding. VLN1 protein co-localizes with actin filaments in several assays. VLN1 binds and bundles F-actin in a calcium-independent manner. It does not nucleate, cap or sever actin filaments and it stabilizes actin filaments, protecting them from ADF-mediated depolymerization.S.X.H.G.
0.6781.6At5g66750836808CHR1 (CHROMATIN REMODELING 1)Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.S.X.H.G.
0.6176.7At3g49660824128transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:G-protein coupled receptor protein signaling pathway;C:chloroplast, heterotrimeric G-protein complex;MFOPBAVS.X.H.G.
0.6176.7At1g16330838202CYCB3core cell cycle genesS.X.H.G.
0.5974.7At2g31270817684CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A)Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division. Located in nucleus and chloroplast.S.X.H.G.
0.5773.8At2g35160818083SUVH5 (SU(VAR)3-9 HOMOLOG 5)Encodes SU(var)3-9 homologue 5 (SUVH5). SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
229.4100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
209.8100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
205.4100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
193.6100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
187.9100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
187.6100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
186.6100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
175.2100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
170.1100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
168.5100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.9705281At5g36740833643PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOPFBVC.G.S.X.
0.022e-656At1g05380837039DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFABC.G.S.X.
0.015e-448At3g14980820727PHD finger transcription factor, putativeF:protein binding, DNA binding, zinc ion binding, N-acetyltransferase activity;P:regulation of transcription, DNA-dependent, metabolic process;C:nucleus;MPFOBAC.G.S.X.
0.021e-140At4g14920827150DNA binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOC.G.S.X.
0.015e-138At5g04860830365unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;PFOMBC.G.S.X.
0.015e-138At4g30130829136unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFC.G.S.X.
0.015e-138At2g39340818519SAC3/GANP family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.015e-138At2g10560815517unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.011e-244Glycine maxGmaAffx.77379.2.S1_atBM527283--4e-4At1g05380DNA bindingC.G.S.X.
0.019e-136Hordeum vulgareContig10332_atContig10332--1e-11At1g69390ATMINE1 (Arabidopsis homologue of bacterial MinE 1)C.G.S.X.
0.024e-1275Oryza sativaOs03g0747600AK106588.1-GCN5-related N-acetyltransferase domain containingprotein2e-12At5g36670PHD finger family proteinC.G.S.X.
0.081e-1483Populus trichocarpaPtpAffx.205696.1.S1_atpmrna11249hypothetical protein-3e-15At5g36740PHD finger family proteinC.G.S.X.
0.015e-138Triticum aestivumTa.20865.2.S1_atCA625736--8e-2At1g62840unknown proteinC.G.S.X.
0.011e-138Vitis vinifera1613831_atCD801016hypothetical protein LOC100247537-1e-10At4g37970CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)C.G.S.X.
0.015e-240Zea maysZm.7617.1.S1_atAB127981.1minE protein-1e-7At1g69390ATMINE1 (Arabidopsis homologue of bacterial MinE 1)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage