CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g36170

Gene name HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At5g36170 833614 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) Required for normal processing of polycistronic plastidial transcripts S.X. H.G.
0.53 68.6 At3g01370 821288 ATCFM2 (CRM FAMILY MEMBER 2) Encodes a protein containing a CRM domain that is involved in group I and group II intron splicing. S.X. H.G.
0.46 59.8 At1g71720 843502 S1 RNA-binding domain-containing protein F:RNA binding;P:unknown;C:chloroplast;BOPMAF S.X. H.G.
0.42 53.9 At3g49140 824075 - F:unknown;P:unknown;C:unknown;PBMOFVA S.X. H.G.
0.36 43.6 At3g43540 823446 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP S.X. H.G.
0.31 33.8 At5g46420 834685 16S rRNA processing protein RimM family F:ribosome binding, nucleotidyltransferase activity;P:metabolic process, rRNA processing, ribosome biogenesis;C:chloroplast;BOMFP S.X. H.G.
0.25 22.6 At2g41720 818771 EMB2654 (EMBRYO DEFECTIVE 2654) F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.7 99.3 GSM131108 Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
11.3 99.3 GSM131106 Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
9.9 99.1 GSM131107 Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH1 GSE5614 Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species study)
8.7 99.0 E-ATMX-33-raw-cel-1562596264
8.6 99.0 GSM318331 EL_14DAS_2 GSE12676 Arabidopsis thaliana Ler developmental series
7.8 98.9 E-TABM-21-raw-cel-529816565
7.8 98.9 GSM318619 Apex_Col_14DAS_2 GSE12691 Knockdown and overexpression of CIN-TCP genes
7.8 98.9 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
7.5 98.8 GSM318627 Apex_BLS>>TCP4_14DAS_2 GSE12691 Knockdown and overexpression of CIN-TCP genes
6.9 98.7 GSM183512 MYB76_OE_rep2 GSE7570 ATR1_like_Clade_OE_and_miR
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 42 At1g56350 842089 peptide chain release factor, putative F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPV C.G. S.X.
0.01 4e-2 40 At4g17890 827512 AGD8 (ARF-GAP DOMAIN 8) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. C.G. S.X.
0.01 7e-1 36 At5g27650 832827 PWWP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 7e-1 36 At5g06839 830575 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF C.G. S.X.
0.01 7e-1 36 At2g36200 818192 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-12 75 Glycine max GmaAffx.35884.2.S1_at BE190551 - - 3e-13 At5g36170 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) C.G. S.X.
0.02 5e+0 32 Hordeum vulgare HB22C09r_at HB22C09r - - 4e+0 At5g36170 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) C.G. S.X.
0.25 1e-28 129 Oryza sativa Os07g0546600 AK065606.1 - Peptide chain release factor 2 family protein 8e-29 At5g36170 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) C.G. S.X.
0.42 2e-35 151 Populus trichocarpa Ptp.7871.1.S1_at CV261392 hypothetical protein - 1e-35 At5g36170 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) C.G. S.X.
0.04 5e-5 50 Triticum aestivum Ta.13520.2.S1_at CA664885 - - 2e-5 At5g36170 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) C.G. S.X.
0.15 9e-13 73 Vitis vinifera 1619536_at CB971140 hypothetical protein LOC100265078 - 1e-9 At5g36170 HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.406.7.A1_at AI670226 - - 3e+0 At5g51020 CRL (CRUMPLED LEAF) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006415 The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
X GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
X GO:0009657 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plastid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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