CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g36140

Gene name CYP716A2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.92 96.0 At5g36140 833611 CYP716A2 member of CYP716A S.X. H.G.
0.67 81.6 At5g38020 833781 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) S.X. H.G.
0.50 65.3 At3g45680 823710 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;PBMOF S.X. H.G.
0.38 46.7 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA S.X. H.G.
0.36 43.6 At5g38030 833782 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM S.X. H.G.
0.35 41.6 At4g28940 829015 catalytic F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO S.X. H.G.
0.13 5.8 At1g49960 841419 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
245.4 100.0 GSM291023 root - 08% oxygen - 30min - G GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
174.9 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
163.5 99.9 GSM291114 root - 21% oxygen - 30min - G GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
155.4 99.9 GSM260882 Yap_A1-AMF_Rep2 GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
123.3 99.9 GSM260883 Yap_A2-AMF_Rep2 GSE10323 Testing Arabidopsis for the presence of arbuscular mycorrhizal signalling pathways
109.9 99.9 E-MEXP-791-raw-cel-1122937596
107.0 99.9 E-MEXP-791-raw-cel-1122937623
88.4 99.9 E-MEXP-791-raw-cel-1122937614
64.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
63.5 99.8 GSM131562 ATGE_93_B GSE5631 AtGenExpress: Developmental series (roots)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.68 0 880 At5g36110 833607 CYP716A1 member of CYP716A C.G. S.X.
0.01 1e-1 38 At3g46370 823783 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA C.G. S.X.
0.02 5e-1 36 At5g04490 830328 VTE5 (vitamin E pathway gene5) Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis. C.G. S.X.
0.01 5e-1 36 At4g15810 827262 GTP binding F:GTP binding;P:biological_process unknown;C:chloroplast outer membrane;BMOPFA C.G. S.X.
0.01 5e-1 36 At2g02080 814739 AtIDD4 (Arabidopsis thaliana Indeterminate(ID)-Domain 4) F:transcription factor activity;P:unknown;C:intracellular, chloroplast;MOPFBVA C.G. S.X.
0.01 5e-1 36 At2g19390 816458 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.03 2e+0 34 At5g63580 836477 FLS2 (FLAVONOL SYNTHASE 2) encodes a protein whose sequence is similar to flavonol synthase C.G. S.X.
0.01 2e+0 34 At5g13920 831239 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-1 38 Glycine max GmaAffx.19831.1.S1_at BU549972 - - 6e-10 At5g36110 CYP716A1 C.G. S.X.
0.02 9e-1 34 Hordeum vulgare Contig18500_at Contig18500 - - 1e+0 At1g64200 VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) C.G. S.X.
0.03 9e-1 36 Oryza sativa Os03g0557600 9631.m03417 - - 2e-1 At5g42635 glycine-rich protein C.G. S.X.
0.08 4e-5 50 Populus trichocarpa PtpAffx.214595.1.S1_s_at pmrna28364 cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// hypothetical protein - 3e-5 At5g36140 CYP716A2 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.57856.1.S1_at CA624496 - - 3e+0 At3g12820 AtMYB10 (myb domain protein 10) C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1620379_at CB980269 - - 4e+0 At4g25100 FSD1 (FE SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.853.1.A1_at AI770653 - - 2e-1 At3g06130 heavy-metal-associated domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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