CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g35980

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.86 93.1 At5g35980 833590 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA S.X. H.G.
0.61 76.7 At1g66340 842951 ETR1 (ETHYLENE RESPONSE 1) Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1. S.X. H.G.
0.59 74.7 At4g36630 829815 EMB2754 (EMBRYO DEFECTIVE 2754) F:small GTPase regulator activity, binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFOP S.X. H.G.
0.59 74.7 At2g41960 818796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.57 73.8 At5g07270 830618 ankyrin repeat family protein F:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVA S.X. H.G.
0.56 73.0 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA S.X. H.G.
0.56 73.0 At3g59770 825146 SAC9 Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses. S.X. H.G.
0.55 70.6 At2g27900 817335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO S.X. H.G.
0.53 68.6 At3g12980 820484 HAC5 Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14. S.X. H.G.
0.52 67.4 At5g14950 831347 GMII (GOLGI ALPHA-MANNOSIDASE II) Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.6 99.7 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.9 99.6 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
14.3 99.4 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
10.4 99.2 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
10.1 99.2 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
9.7 99.1 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
9.3 99.1 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
9.0 99.1 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
8.9 99.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
8.9 99.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-1 38 At5g46330 834676 FLS2 (FLAGELLIN-SENSITIVE 2) Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB. C.G. S.X.
0.01 4e-1 38 At1g07880 837303 ATMPK13 member of MAP Kinase C.G. S.X.
0.01 1e+0 36 At5g27880 832851 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;PMO C.G. S.X.
0.01 1e+0 36 At3g28050 822429 nodulin MtN21 family protein F:unknown;P:biological_process unknown;C:endomembrane system, membrane;PBOAFM C.G. S.X.
0.01 1e+0 36 At3g59610 825130 F-box family protein / jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 1e+0 36 At3g48750 824036 CDC2 (CELL DIVISION CONTROL 2) A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase. C.G. S.X.
0.01 1e+0 36 At2g29605 817510 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-7 59 Glycine max GmaAffx.64155.1.S1_at BU577848 - - 4e-8 At5g35980 protein kinase family protein C.G. S.X.
0.02 1e-2 42 Hordeum vulgare Contig11974_at Contig11974 - - 1e-64 At1g67580 protein kinase family protein C.G. S.X.
0.09 2e-16 89 Oryza sativa Os02g0702500 AK066639.1 - Protein kinase domain containing protein 1e-16 At5g35980 protein kinase family protein C.G. S.X.
0.17 9e-83 309 Populus trichocarpa PtpAffx.125154.1.S1_at CK090462 hypothetical protein - 2e-83 At5g35980 protein kinase family protein C.G. S.X.
0.06 2e-18 95 Triticum aestivum TaAffx.121922.1.S1_at CA712596 - - 9e-19 At5g35980 protein kinase family protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1609191_s_at CB978023 hypothetical protein LOC100258056 - 0 At5g26751 ATSK11 C.G. S.X.
0.01 6e-1 36 Zea mays Zm.2615.1.S1_at CO533179 hypothetical protein LOC100279288 - 5e-5 At3g54180 CDKB1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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