Gene omics information

Query gene ID At5g35930
Gene name AMP-dependent synthetase and ligase family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5773.8At5g35930833582AMP-dependent synthetase and ligase family proteinF:phosphopantetheine binding, acyl carrier activity, catalytic activity, AMP binding, cofactor binding;P:metabolic process;C:cellular_component unknown;BOFMPAS.X.H.G.
0.6781.6At4g27660828880unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.3338.1At4g18465827579RNA helicase, putativeF:RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BMOFVPAS.X.H.G.
0.3133.8At2g34980818062SETH1Encodes a putative phosphatidylinositol-glycan synthase subunit C gene. It is involved in the first step of the glycosylphosphatidylinositol (GPI) biosynthetic pathway.S.X.H.G.
0.2014.4At5g17210831585unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
430.2100.0GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
197.2100.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
88.199.9GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
50.899.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
50.799.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
49.099.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
48.399.8GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
46.099.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
44.899.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-140At5g07920830686DGK1 (DIACYLGLYCEROL KINASE1)diacylglycerol kinaseC.G.S.X.
0.011e-140At4g20220827769-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.014e-138At3g43850823498unknown proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;POC.G.S.X.
0.014e-138At3g16520820900UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:in 6 functions;P:metabolic process;C:cellular_component unknown;PMVBOFC.G.S.X.
0.014e-138At2g077953768238unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.014e-138At1g55780842027metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PC.G.S.X.
0.012e+036At4g38470830003protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation, metabolic process;C:cytosol;MPOBFVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.066e-448Glycine maxGma.7793.1.A1_atBU546252--1e-4At5g35930AMP-dependent synthetase and ligase family proteinC.G.S.X.
0.018e-136Hordeum vulgareContig12884_atContig12884--9e-9At1g06840leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
0.018e-138Oryza sativaOs.56675.1.S1_x_at---0C.G.S.X.
0.152e-965Populus trichocarpaPtpAffx.212265.1.S1_atpmrna24046hypothetical protein-2e-9At5g35930AMP-dependent synthetase and ligase family proteinC.G.S.X.
0.016e+034Triticum aestivumTaAffx.28787.1.S1_atCA656230--2e-1At1g07950surfeit locus protein 5 family protein / SURF5 family proteinC.G.S.X.
0.015e-136Vitis vinifera1609031_atCD008486--1e-6At2g3337060S ribosomal protein L23 (RPL23B)C.G.S.X.
0.011e+132Zea maysZmAffx.1026.1.S1_atAI881620Hypothetical protein LOC100193718-8e-1At1g55660F-box family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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