Gene omics information

Query gene ID At5g35550
Gene name TT2 (TRANSPARENT TESTA 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At5g35550833520TT2 (TRANSPARENT TESTA 2)TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.S.X.H.G.
0.9296.0At1g49800841403unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9296.0At5g47350834782palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOS.X.H.G.
0.7888.6At3g49270824088unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOS.X.H.G.
0.7385.5At4g32170829349CYP96A2member of CYP96AS.X.H.G.
0.7184.2At1g17260838297AHA10 (Autoinhibited H(+)-ATPase isoform 10)belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification processS.X.H.G.
0.6378.1At4g15750827253invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;POS.X.H.G.
0.6176.7At1g24540839069CYP86C1member of CYP86CS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
572.2100.0GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
435.5100.0GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
390.6100.0GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
367.5100.0GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
348.8100.0GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
271.3100.0GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
262.6100.0GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
260.3100.0GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
248.3100.0GSM311283Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
244.3100.0GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.131e-1067At5g52600835337AtMYB82 (myb domain protein 82)Member of the R2R3 factor gene family.C.G.S.X.
0.073e-859At3g23250821904MYB15 (MYB DOMAIN PROTEIN 15)Member of the R2R3 factor gene family.C.G.S.X.
0.103e-550At4g09460826530ATMYB6Encodes myb6 DNA-binding protein.C.G.S.X.
0.071e-448At1g66230842938MYB20 (myb domain protein 20)Encodes a putative transcription factor (MYB20).C.G.S.X.
0.114e-446At5g40330834031MYB23 (MYB DOMAIN PROTEIN 23)Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.C.G.S.X.
0.064e-446At1g74430843784MYB95 (myb domain protein 95)Encodes a putative transcription factor (MYB95).C.G.S.X.
0.044e-446At1g18710838453AtMYB47 (myb domain protein 47)Member of the R2R3 factor gene family.C.G.S.X.
0.104e-446At1g57560842131AtMYB50 (myb domain protein 50)Member of the R2R3 factor gene family.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.232e-25117Glycine maxGmaAffx.5013.1.S1_atBM092559--2e-13At1g22640MYB3 (MYB DOMAIN PROTEIN 3)C.G.S.X.
0.037e-134Hordeum vulgareHVSMEk0018E17r2_atHVSMEk0018E17r2--7e-1At4g13965-C.G.S.X.
0.055e-1169Oryza sativaOs03g0410000D88619.1-R2R3 Myb transcription factor MYB-IF255e-11At5g35550TT2 (TRANSPARENT TESTA 2)C.G.S.X.
0.224e-2099Populus trichocarpaPtpAffx.8131.5.A1_a_atBU891795--3e-20At5g35550TT2 (TRANSPARENT TESTA 2)C.G.S.X.
0.081e-138Triticum aestivumTaAffx.110371.1.S1_atCA695662--7e-2At5g35550TT2 (TRANSPARENT TESTA 2)C.G.S.X.
0.073e-548Vitis vinifera1620713_s_atCB970375flavonoid-related R2R3 MYB 4a repressor transcription factor-3e-58At4g38620MYB4C.G.S.X.
0.082e-446Zea maysZm.13870.1.S1_atAY237128.1myb-related protein c1-I-2K1-4e-4At5g35550TT2 (TRANSPARENT TESTA 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010023The chemical reactions and pathways resulting in the formation of proanthocyanidin.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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