CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g35390

Gene name leucine-rich repeat transmembrane protein kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.96 97.3 At5g35390 833500 leucine-rich repeat transmembrane protein kinase, putative Encodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis. S.X. H.G.
0.70 83.5 At4g02650 828212 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;MOPFBAV S.X. H.G.
0.68 82.2 At5g45840 834624 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.66 80.1 At5g57690 835876 diacylglycerol kinase F:diacylglycerol kinase activity;P:activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway;C:chloroplast;MPOB S.X. H.G.
0.65 79.6 At5g16540 831516 ZFN3 (ZINC FINGER NUCLEASE 3) Encodes a zinc finger protein. S.X. H.G.
0.65 79.6 At1g44160 841019 DNAJ chaperone C-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMFPAV S.X. H.G.
0.64 78.9 At2g17890 816299 CPK16 member of Calcium Dependent Protein Kinase S.X. H.G.
0.63 78.1 At3g04690 819627 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.62 77.3 At3g22750 821846 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.61 76.7 At1g49270 841351 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOBPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
369.8 100.0 E-MEXP-285-raw-cel-440782725
321.6 100.0 E-MEXP-285-raw-cel-440782791
166.5 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
165.4 100.0 E-MEXP-1138-raw-cel-1432773034
148.0 99.9 E-MEXP-1138-raw-cel-1432772906
142.0 99.9 E-MEXP-1138-raw-cel-1432773066
135.8 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
120.4 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
112.2 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
108.3 99.9 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.44 2e-26 121 At2g07040 815274 PRK2A Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth. C.G. S.X.
0.04 3e-7 57 At3g20190 821563 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOFBVA C.G. S.X.
0.04 2e-2 42 At1g50610 841483 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVA C.G. S.X.
0.01 2e-1 38 At4g35560 829708 - F:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex;MOFPB C.G. S.X.
0.01 2e-1 38 At4g03320 827972 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) F:unknown;P:unknown;C:unknown;PB C.G. S.X.
0.01 1e+0 36 At4g10390 826631 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:response to wounding;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 1e+0 36 At4g01410 828166 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.01 1e+0 36 At4g08850 826456 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Glycine max GmaAffx.56205.1.A1_at BU550336 - - 4e+0 At5g55410 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.01 1e-1 38 Hordeum vulgare rbaal30i24_at rbaal30i24 - - 2e-5 At5g26240 CLC-D (CHLORIDE CHANNEL D) C.G. S.X.
0.01 5e-1 38 Oryza sativa Os08g0510101 9636.m04040 - - 2e+0 At4g05265 unknown protein C.G. S.X.
0.12 6e-9 63 Populus trichocarpa PtpAffx.206203.1.S1_at pmrna12320 hypothetical protein - 4e-9 At5g35390 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.38162.2.S1_at BJ322422 - - 4e+0 At5g20181 unknown protein C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1618934_at CB343172 hypothetical protein LOC100264485 - 3e-20 At5g23890 - C.G. S.X.
0.01 4e-1 36 Zea mays Zm.18101.1.S1_at CA827356 - - 5e+0 At4g36020 CSDP1 (cold shock domain protein 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006468 The process of introducing a phosphate group on to a protein.
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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