CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g34930

Gene name arogenate dehydrogenase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g34930 833436 arogenate dehydrogenase F:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:unknown;BOPAFM S.X. H.G.
0.50 65.3 At5g13500 831194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO S.X. H.G.
0.32 35.7 At2g34250 817986 protein transport protein sec61, putative F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:response to salt stress, protein secretion;C:membrane;BOMAFP S.X. H.G.
0.23 19.3 At5g14310 831281 AtCXE16 (Arabidopsis thaliana carboxyesterase 16) F:hydrolase activity;P:metabolic process;C:endomembrane system;BOPFMAV S.X. H.G.
0.20 14.4 At5g03290 831884 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative F:isocitrate dehydrogenase (NAD+) activity, ATP binding;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion, chloroplast;BOMFAP S.X. H.G.
0.19 12.7 At2g36300 818202 integral membrane Yip1 family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOP S.X. H.G.
0.15 7.8 At3g06540 819832 GDP dissociation inhibitor family protein / Rab GTPase activator family protein F:RAB GDP-dissociation inhibitor activity;P:intracellular protein transport, regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB S.X. H.G.
0.12 4.9 At5g55610 835655 unknown protein F:unknown;P:unknown;C:mitochondrion, chloroplast, plastid, membrane;P S.X. H.G.
0.11 4.1 At3g51580 824321 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFV S.X. H.G.
0.09 2.8 At1g78920 844231 AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) vacuolar-type H+-translocating inorganic pyrophosphatase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.4 99.8 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
40.2 99.8 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
31.7 99.7 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
31.4 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
27.1 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
21.3 99.6 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
18.8 99.5 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
18.6 99.5 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.3 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.1 99.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 2e-8 61 At1g15710 838140 prephenate dehydrogenase family protein F:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:chloroplast;BOFPAM C.G. S.X.
0.01 4e-3 44 At5g54180 835506 PTAC15 (PLASTID TRANSCRIPTIONALLY ACTIVE15) F:molecular_function unknown;P:biological_process unknown;C:plastid chromosome, chloroplast, nucleoid;PMO C.G. S.X.
0.01 4e-3 44 At4g21323 827881 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM C.G. S.X.
0.02 6e-2 40 At5g41520 834154 40S ribosomal protein S10 (RPS10B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast;MPBOFV C.G. S.X.
0.01 2e-1 38 At3g58430 825012 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFAV C.G. S.X.
0.01 2e-1 38 At3g26630 822275 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFM C.G. S.X.
0.02 2e-1 38 At2g04622 6241364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 1e+0 36 At5g01220 831888 SQD2 (sulfoquinovosyldiacylglycerol 2) involved in sulfolipid biosynthesis C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-3 46 Glycine max Gma.17596.1.S1_at BQ452466 - - 9e-7 At1g15710 prephenate dehydrogenase family protein C.G. S.X.
0.02 8e-3 42 Hordeum vulgare Contig8636_at Contig8636 - - 2e-3 At1g15710 prephenate dehydrogenase family protein C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.8905.1.S1_at - - - 0 C.G. S.X.
0.32 2e-39 165 Populus trichocarpa PtpAffx.216798.1.S1_at pmrna31817 arogenate dehydrogenase - 7e-40 At5g34930 arogenate dehydrogenase C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.64478.1.A1_at CD914133 - - 2e+0 At4g04110 Toll-Interleukin-Resistance (TIR) domain-containing protein C.G. S.X.
0.02 3e-4 46 Vitis vinifera 1610900_at CF516848 hypothetical LOC100244581 - 2e-1 At1g78480 prenyltransferase/squalene oxidase repeat-containing protein C.G. S.X.
0.03 2e-3 44 Zea mays Zm.13670.1.A1_at AY107037.1 hypothetical protein LOC100276497 - 3e-3 At5g34930 arogenate dehydrogenase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006571 The chemical reactions and pathways resulting in the formation of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00017 Aromatic amino acid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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