Gene omics information

Query gene ID At5g33290
Gene name XGD1 (XYLOGALACTURONAN DEFICIENT 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7486.1At5g33290833302XGD1 (XYLOGALACTURONAN DEFICIENT 1)Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.S.X.H.G.
0.3643.6At2g19130816430S-locus lectin protein kinase family proteinF:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAS.X.H.G.
0.3133.8At3g55470824713C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.2930.3At5g04930830375ALA1 (aminophospholipid ATPase1)Encodes a putative aminophospholipid translocase (p-type ATPase) involved in chilling response.S.X.H.G.
0.2522.6At3g18830821416ATPLT5 (POLYOL TRANSPORTER 5)This gene encodes a plasma membrane-localized polyol/cyclitol/monosaccharide-H+-symporter. The AtPLT5 symporter is able to catalyze the energy-dependent membrane passage of a wide range of linear polyols (three to six carbon backbone), of cyclic polyols (myo-inositol), and of numerous monosaccharides, including pyranose ring-forming and furanose ring-forming hexoses and pentoses. This gene belongs to a monosaccharide transporter-like (MST-like) superfamily.S.X.H.G.
0.2522.6At5g61010836222ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.2217.5At1g14370837999APK2A (PROTEIN KINASE 2A)Encodes protein kinase APK2a.S.X.H.G.
0.2217.5At5g42050834210-F:molecular_function unknown;P:unknown;C:unknown;OMPFBVS.X.H.G.
0.2115.8At3g51430824306YLS2strictosidine synthase-like proteinS.X.H.G.
0.2014.4At1g67970843125AT-HSFA8member of Heat Stress Transcription Factor (Hsf) familyS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.299.8GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
51.599.8GSM142629MC002_ATH1_A3.1-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
44.799.8GSM142631MC002_ATH1_A3.3-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
42.999.8GSM142630MC002_ATH1_A3.2-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
41.599.8GSM142644MC002_ATH1_A8.1-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
39.599.8E-MEXP-807-raw-cel-1173272948
38.199.8GSM133735Buchanan-Wollaston_A-7-bwoll-Ei1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
37.899.8GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
37.299.7GSM133731Buchanan-Wollaston_A-3-bwoll-C0S_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
36.299.7GSM142646MC002_ATH1_A8.3-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.071e-552At5g20260832148catalyticF:catalytic activity;P:biological_process unknown;C:chloroplast, membrane;PMOBFC.G.S.X.
0.033e-344At5g11130830981exostosin family proteinF:catalytic activity;P:unknown;C:membrane;PMOBFC.G.S.X.
0.113e-344At3g42180823191catalytic/ transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups, catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBFC.G.S.X.
0.017e-136At5g528825008305ATP binding / nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAVC.G.S.X.
0.017e-136At5g63120836432ethylene-responsive DEAD box RNA helicase, putative (RH30)F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:unknown;BMOFPAVC.G.S.X.
0.017e-136At5g15310831383ATMYB16 (MYB DOMAIN PROTEIN 16)Member of the R2R3 factor gene family.C.G.S.X.
0.017e-136At4g28000828913ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-550Glycine maxGma.6122.1.S1_atBQ611634--2e-23At1g17330metal-dependent phosphohydrolase HD domain-containing protein-relatedC.G.S.X.
0.026e+032Hordeum vulgareContig16258_atContig16258--7e+0At4g271502S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2C.G.S.X.
0.026e+034Oryza sativaOs.23841.1.A1_at---0C.G.S.X.
0.072e-242Populus trichocarpaPtpAffx.214208.1.S1_atpmrna27648hypothetical protein-3e-5At5g11130exostosin family proteinC.G.S.X.
0.025e-240Triticum aestivumTaAffx.84170.1.S1_atCA643359--1e-6At4g22140DNA binding / protein binding / zinc ion bindingC.G.S.X.
0.024e+032Vitis vinifera1615642_atCB345328--4e+0At5g54740protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.021e+034Zea maysZm.445.2.A1_atAF457968.1Lipoxygenase-4e+0At5g47600heat shock protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010398The chemical reactions and pathways involving xylogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues substituted on C-3 with beta-D-xylopyranose residues.
XGO:0045489The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00359Link to KaPPA-View 4Glucosyltransferase
00437Link to KaPPA-View 4Xyloglucan biosynthesis and modification
00439Link to KaPPA-View 4Rhamnogalacturonan I biosynthesis
00441Link to KaPPA-View 4Rhamnogalacturonan II biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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