CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g28800

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.72 84.8 At5g28800 832996 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.68 82.2 At5g62160 836336 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) member of Fe(II) transporter isolog family S.X. H.G.
0.67 81.6 At5g44850 834515 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO S.X. H.G.
0.64 78.9 At5g46310 834674 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;FP S.X. H.G.
0.63 78.1 At5g15380 831390 DRM1 (domains rearranged methylase 1) Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences. S.X. H.G.
0.63 78.1 At2g35460 818111 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
0.63 78.1 At1g10890 837632 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA S.X. H.G.
0.63 78.1 At2g27520 817298 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.63 78.1 At1g67220 843042 HAC2 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2) F:histone acetyltransferase activity, transcription cofactor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBPF S.X. H.G.
0.62 77.3 At2g03580 814887 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
369.9 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
270.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
256.9 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
242.7 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
207.4 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
152.3 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
146.0 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
138.7 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
133.0 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
126.6 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 2e-1 36 At5g58590 835973 RANBP1 (RAN BINDING PROTEIN 1) Encodes a Ran-binding protein 1 homolog (RanBP1). C.G. S.X.
0.01 2e-1 36 At1g74180 843758 AtRLP14 (Receptor Like Protein 14) F:protein binding;P:signal transduction;C:chloroplast;PMOBFAV C.G. S.X.
0.03 2e-1 36 At1g09470 837470 unknown protein F:molecular_function unknown;P:unknown;C:unknown;MOBFPAV C.G. S.X.
0.04 7e-1 34 At1g75350 843871 emb2184 (embryo defective 2184) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOP C.G. S.X.
0.02 3e+0 32 At5g08510 830750 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMAB C.G. S.X.
0.03 3e+0 32 At5g41300 834131 receptor-like protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO C.G. S.X.
0.02 3e+0 32 At4g20170 827763 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOF C.G. S.X.
0.02 3e+0 32 At4g19865 827732 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOBVF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max Gma.8369.1.S1_at BU551102 - - 2e-8 At5g18850 unknown protein C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HY03N17u_s_at HY03N17u - - 2e-1 At3g19560 F-box family protein C.G. S.X.
0.04 1e+0 34 Oryza sativa OsAffx.28261.1.S1_at - - - 0 C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.249.42.S1_s_at CX654838 hypothetical protein - 6e-6 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.79957.1.S1_at CA705158 - - 6e-5 At3g45610 Dof-type zinc finger domain-containing protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1607255_at CF373225 hypothetical protein LOC100243801 - 2e-39 At5g58590 RANBP1 (RAN BINDING PROTEIN 1) C.G. S.X.
0.04 5e+0 30 Zea mays ZmAffx.866.1.A1_at AI770731 - - 2e-1 At5g55850 NOI C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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