CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g28640

Gene name AN3 (ANGUSTIFOLIA 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g28640 832968 AN3 (ANGUSTIFOLIA 3) Encodes a protein with similarity to mammalian transcriptional coactivator that is involved in cell proliferation during leaf and flower development. Loss of function mutations have narrow, pointed leaves and narrow floral organs. AN3 interacts with members of the growth regulating factor (GRF) family of transcription factors. S.X. H.G.
0.67 81.6 At4g37750 829931 ANT (AINTEGUMENTA) ANT is required for control of cell proliferation and encodes a putative transcriptional regulator similar to AP2. Loss of function alleles have reduced fertility, abnormal ovules and abnormal lateral organs. Expressed specifically in the chalaza and in floral organ primordia. S.X. H.G.
0.64 78.9 At4g29030 829024 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA S.X. H.G.
0.59 74.7 At2g26330 817173 ER (ERECTA) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. S.X. H.G.
0.59 74.7 At3g61310 825303 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOB S.X. H.G.
0.56 73.0 At5g08000 830694 E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3) Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and binds callose. S.X. H.G.
0.53 68.6 At1g67040 843024 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.53 68.6 At2g45190 819127 AFO (ABNORMAL FLORAL ORGANS) Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. YAB1 acts in a non-cell autonomous fashion within the meristem to affect phyllotactic patterning. The non-autonomous effect on the central region of the meristem is mediated through the activity if Lateral Suppressor (LAS). S.X. H.G.
0.48 62.5 At5g65410 836666 HB25 (HOMEOBOX PROTEIN 25) Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family. S.X. H.G.
0.46 59.8 At3g02210 821245 COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
80.6 99.9 GSM311290 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
69.3 99.9 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
69.3 99.9 E-MEXP-682-raw-cel-922397594
68.3 99.9 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
66.9 99.8 E-MEXP-682-raw-cel-922397611
66.2 99.8 E-MEXP-682-raw-cel-922397696
65.8 99.8 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
65.1 99.8 E-MEXP-682-raw-cel-922397713
58.6 99.8 GSM131671 ATGE_48_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
54.8 99.8 GSM242962 Mock day 7 (day7E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At5g57180 835824 CIA2 (CHLOROPLAST IMPORT APPARATUS 2) Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast. C.G. S.X.
0.02 3e-1 36 At5g39570 833953 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;PO C.G. S.X.
0.02 3e-1 36 At4g11300 826732 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO C.G. S.X.
0.06 3e-1 36 At4g00850 827995 GIF3 (GRF1-INTERACTING FACTOR 3) Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA C.G. S.X.
0.02 3e-1 36 At3g23210 821899 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBA C.G. S.X.
0.02 3e-1 36 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 7e-40 165 Glycine max Gma.8684.1.S1_at AW317180 - - 1e-39 At5g28640 AN3 (ANGUSTIFOLIA 3) C.G. S.X.
0.03 4e-2 38 Hordeum vulgare HF24I04r_at HF24I04r - - 8e-2 At5g28640 AN3 (ANGUSTIFOLIA 3) C.G. S.X.
0.02 4e-2 40 Oryza sativa Os.56806.1.S1_at - - - 0 C.G. S.X.
0.26 9e-27 121 Populus trichocarpa PtpAffx.14349.1.S1_at CV242146 hypothetical protein - 1e-26 At5g28640 AN3 (ANGUSTIFOLIA 3) C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.85201.1.S1_at CA624822 - - 2e-1 At5g28640 AN3 (ANGUSTIFOLIA 3) C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1606909_at CF608589 hypothetical protein LOC100244670 - 9e-32 At5g51600 PLE (PLEIADE) C.G. S.X.
0.03 5e-1 34 Zea mays Zm.4439.1.A1_a_at CA404865 - - 2e+1 Atmg01240 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0008283 The multiplication or reproduction of cells, resulting in the expansion of a cell population.
X GO:0048366 The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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