Gene omics information

Query gene ID At5g28550
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5166.3At5g28550832952-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7989.1At1g36230840529unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BMFOPS.X.H.G.
0.7486.1At2g15520816044transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6579.6At1g63200842624-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6277.3At4g097103770352transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5974.7At2g053903768626transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5873.8At5g332603771121transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5673.0At5g47260834773ATP binding / GTP binding / nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, GTP binding, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:cellular_component unknown;PMBOFAS.X.H.G.
0.5570.6At5g28590832956DNA-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFS.X.H.G.
0.5368.6At1g566753767473transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
956.8100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
688.5100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
557.4100.0GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
513.3100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
103.899.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
102.999.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
99.899.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
92.799.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
86.799.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
82.599.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-344At2g36270818199ABI5 (ABA INSENSITIVE 5)Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.C.G.S.X.
0.013e-240At4g22970828396AESP (ARABIDOPSIS HOMOLOG OF SEPARASE)Putative separase gene, homologous to human and mouse separase protein. It contains a predicted 2Fe2S-ferredoxin domain that is not present in the proteins of other organisms. Also contains a putative EF-hand calcium binding domain. Mutant seeds exhibited embryo arrest at the globular stage. The endosperm also exhibited a weak titan-like phenotype. Transgenic plants expressing AESP RNA interference (RNAi) from the meiosis-specific DMC1 promoter exhibited alterations in chromosome segregation during meiosis I and II that resulted in polyads containing from one to eight microspores. AESP plays an essential role in embryo development and is required for the removal of cohesin from meiotic chromosomes.C.G.S.X.
0.013e-240At2g20050816524ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphataseF:cAMP-dependent protein kinase regulator activity, protein kinase activity, protein serine/threonine phosphatase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation, protein amino acid dephosphorylation, N-terminal protein myristoylation, regulation of protein amino acid phosphorylation;C:plasma membrane;MOPFBVAC.G.S.X.
0.024e-136At4g37490829904CYCB1Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.C.G.S.X.
0.012e+034At5g282372746023tryptophan synthase, beta subunit, putativeF:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process, tryptophan metabolic process;C:unknown;BOAFPMC.G.S.X.
0.012e+034At5g63890836509ATHDH (HISTIDINOL DEHYDROGENASE)Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.C.G.S.X.
0.012e+034At5g51430835217EYE (EMBRYO YELLOW)Encodes a protein that is homologous to Cog7, a subunit of the conserved oligomeric Golgi (COG) complex, which is required for the normal morphology and function of the Golgi apparatus. It is likely to be involved in transport or retention of Golgi-localized proteins and in maintenance of Golgi morphology.C.G.S.X.
0.012e+034At3g07040819889RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1)Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-136Glycine maxGmaAffx.4821.1.S1_atBI893881--2e-1At5g28550-C.G.S.X.
0.023e+032Hordeum vulgareContig24312_atContig24312--5e+0At5g28550-C.G.S.X.
0.035e-240Oryza sativaOs07g06086009635.m04180--3e+0At2g16005MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinC.G.S.X.
0.036e-136Populus trichocarpaPtpAffx.5580.5.S1_atCV240415hypothetical protein-4e-1At5g28550-C.G.S.X.
0.032e+034Triticum aestivumTa.17063.1.S1_atCA617193--4e+0At3g46300unknown proteinC.G.S.X.
0.035e-134Vitis vinifera1614227_atBQ798892hypothetical protein LOC100255817-1e+0At5g28550-C.G.S.X.
0.023e+032Zea maysZm.9098.1.A1_a_atBM336161Hypothetical protein LOC100192894-6e-6At4g31550WRKY11C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage