Gene omics information

Query gene ID At5g28540
Gene name BIP1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6075.7At5g28540832950BIP1Encodes the luminal binding protein BiP, an ER-localized member of the HSP70 family. BiP is composed of an N-terminal ATP binding domain and a C-terminal domain that binds to hydrophobic patches on improperly/incompletely folded proteins in an ATP-dependent manner.S.X.H.G.
1.00100.0At4g16660827367heat shock protein 70, putative / HSP70, putativeF:ATP binding;P:unknown;C:plasma membrane, chloroplast;OBMFPAVS.X.H.G.
1.00100.0At5g03160831917ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK)J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.S.X.H.G.
0.8089.8At3g62600825434ATERDJ3BJ domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.S.X.H.G.
0.6781.6At1g56340842087CRT1 (CALRETICULIN 1)Encodes calreticulin CRT1.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
40.399.8GSM311276Laser capture microdissected (LCM) micropylar endospermr at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
32.599.7GSM311275Laser capture microdissected (LCM) micropylar endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
22.599.6GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
19.699.6GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
19.199.6GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
16.899.5GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
15.799.5GSM311278Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
14.699.4GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
14.599.4GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
14.599.4GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.9703552At5g42020834207BIP2luminal binding protein (BiP)C.G.S.X.
0.143e-25117At3g09440820102heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)F:ATP binding;P:protein folding, response to cadmium ion, response to heat;C:in 7 components;OBMFPVAC.G.S.X.
0.312e-20101At1g09080837429BIP3F:ATP binding;P:protein folding, response to heat;C:endoplasmic reticulum lumen;OBMFPVAC.G.S.X.
0.112e-20101At1g56410842094ERD2 (EARLY-RESPONSIVE TO DEHYDRATION 2)encodes a heat shock protein whose gene expression is induced by heat and dehydration.C.G.S.X.
0.088e-2099At5g09590830818MTHSC70-2 (MITOCHONDRIAL HSP70 2)heat shock protein 70 (Hsc70-5); nuclearC.G.S.X.
0.115e-1583At5g02490831856heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVAC.G.S.X.
0.105e-1273At4g37910829947mtHsc70-1 (mitochondrial heat shock protein 70-1)F:ATP binding;P:protein folding, response to cadmium ion, response to salt stress, response to heat;C:mitochondrion, cell wall, plasma membrane, mitochondrial matrix;OBMFPVAC.G.S.X.
0.084e-963At5g49910835054CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)heat shock protein 70 (Hsc70-7); nuclearC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.650825Glycine maxGma.17631.1.S1_atU08383.1Century 84 BiP isoform B-0At5g28540BIP1C.G.S.X.
0.680948Hordeum vulgareL32165_s_atL32165--0At5g42020BIP2C.G.S.X.
0.640880Oryza sativaOs02g0115900AF006825.1-Endosperm lumenal binding protein0At5g42020BIP2C.G.S.X.
0.670678Populus trichocarpaPtpAffx.210289.1.S1_atpmrna20243hypothetical protein-0At5g42020BIP2C.G.S.X.
0.580880Triticum aestivumTa.21335.1.S1_a_atBJ321089--0At5g42020BIP2C.G.S.X.
0.376e-126450Vitis vinifera1618423_atCB973428hypothetical protein LOC100251379-5e-126At5g42020BIP2C.G.S.X.
0.620898Zea maysZm.280.1.A1_atU58208.1Binding protein homolog1-0At5g42020BIP2C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0030433The chemical reactions and pathways resulting in the breakdown of unfolded or misfolded proteins transported from the endoplasmic reticulum and targeted to cytoplasmic proteasomes for degradation.
XGO:0009408A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
SGO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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