Gene omics information

Query gene ID At5g28300
Gene name trihelix DNA-binding protein, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g28300832914trihelix DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBVAS.X.H.G.
0.1811.4At4g14510827098RNA bindingF:RNA binding;P:biological_process unknown;C:chloroplast;POMFBVAS.X.H.G.
0.1710.2At5g02250830864EMB2730 (EMBRYO DEFECTIVE 2730)Encodes a exoribonuclease involved in rRNA processing in mitochondria and chloroplasts.Loss of function mutations are pale green and require supplementation with sucrose for germination and early development. Plants are pale green due to defects in chloroplast biogenesis.S.X.H.G.
0.135.8At4g02510827934TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane.S.X.H.G.
0.124.9At5g57850835895aminotransferase class IV family proteinF:4-amino-4-deoxychorismate lyase activity, catalytic activity;P:tetrahydrofolate biosynthetic process;C:chloroplast;BOAPFS.X.H.G.
0.040.9At4g10180826609DET1 (DE-ETIOLATED 1)Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.S.X.H.G.
0.030.6At2g42320818833nucleolar protein gar2-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
26.199.7E-MEXP-98-raw-cel-320188804
25.699.7E-MEXP-1725-raw-cel-1669614592
25.199.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
24.699.6GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.999.6GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
22.899.6GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
22.199.6GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.599.6GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
19.499.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
19.399.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.031e-656At1g76880844023trihelix DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription;C:unknown;OMPFBVC.G.S.X.
0.032e-448At1g33240840218AT-GTL1 (GT2-LIKE 1)Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone.C.G.S.X.
0.021e-242At3g19320821466leucine-rich repeat family proteinF:protein binding;P:unknown;C:endomembrane system;PMOBFVAC.G.S.X.
0.011e-242At2g16440816142DNA replication licensing factor, putativeF:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:nucleus, chloroplast;MOFPBAVC.G.S.X.
0.016e-240At1g70620843399cyclin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.012e-138At5g60970836218TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5)TCP gene involved in heterochronic control of leaf differentiation.C.G.S.X.
0.012e-138At5g57580835862calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.092e-1171Glycine maxGmaAffx.49204.1.S1_atBE022511trihelix transcription factor-7e-12At5g28300trihelix DNA-binding protein, putativeC.G.S.X.
0.021e-448Hordeum vulgareContig14030_atContig14030--8e-13At1g76880trihelix DNA-binding protein, putativeC.G.S.X.
0.032e-346Oryza sativaOs06g0175400NM_185681.1-BSD domain containing protein6e-1At4g39260GR-RBP8C.G.S.X.
0.124e-1377Populus trichocarpaPtpAffx.210989.1.S1_atpmrna21581hypothetical protein-3e-13At5g28300trihelix DNA-binding protein, putativeC.G.S.X.
0.022e-138Triticum aestivumTaAffx.11877.1.S1_atBJ316676--1e+0At4g03940unknown proteinC.G.S.X.
0.096e-30131Vitis vinifera1609798_atCB980206hypothetical protein LOC100255432-7e-30At5g28300trihelix DNA-binding protein, putativeC.G.S.X.
0.011e-138Zea maysZm.1530.1.S1_atBM080103nucleus protein-6e+0At5g48860unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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