CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g28080

Gene name WNK9

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At5g28080 832881 WNK9 Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. S.X. H.G.
0.55 70.6 At5g44160 834439 NUC (nutcracker) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF S.X. H.G.
0.40 50.8 At4g31100 829237 wall-associated kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.35 41.6 At5g65790 836708 MYB68 (MYB DOMAIN PROTEIN 68) Encodes a putative MYB transcription factor. S.X. H.G.
0.31 33.8 At3g09960 820157 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BOPMFAV S.X. H.G.
0.30 32.1 At5g49780 835041 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.29 30.3 At1g71692 843497 AGL12 (AGAMOUS-LIKE 12) Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots. S.X. H.G.
0.27 26.2 At5g16900 831553 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.26 24.4 At2g28970 817446 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.26 24.4 At1g18860 838467 WRKY61 member of WRKY Transcription Factor; Group II-b S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
187.9 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
137.8 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
131.4 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
123.1 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
115.7 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
108.2 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
107.5 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
107.0 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
106.4 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
101.7 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 2e-118 426 At3g04910 819651 WNK1 (WITH NO LYSINE (K) 1) Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm. C.G. S.X.
0.07 1e-17 91 At3g48260 823984 WNK3 Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. C.G. S.X.
0.22 1e-11 71 At3g22420 821810 WNK2 (WITH NO K 2) Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms. C.G. S.X.
0.04 1e-11 71 At3g18750 821406 WNK6 (WITH NO K (=LYSINE) 6) Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 7e-20 99 Glycine max GmaAffx.75292.1.S1_at BM521603 with no lysine kinase 9 - 5e-31 At5g28080 WNK9 C.G. S.X.
0.02 8e-5 48 Hordeum vulgare Contig12125_at Contig12125 - - 6e+0 At3g07522 unknown protein C.G. S.X.
0.06 8e-8 59 Oryza sativa Os05g0108300 AY336987.1 - MAP kinase-like protein 1e-9 At3g48260 WNK3 C.G. S.X.
0.36 2e-66 254 Populus trichocarpa PtpAffx.222714.1.S1_at pmrna40302 hypothetical protein - 5e-113 At5g28080 WNK9 C.G. S.X.
0.03 4e-2 40 Triticum aestivum Ta.12423.2.S1_at BG907159 - - 2e-4 At3g20680 unknown protein C.G. S.X.
0.04 3e-6 52 Vitis vinifera 1615909_s_at CF518671 hypothetical protein LOC100255269 - 2e-17 At5g58350 WNK4 (WITH NO K (=LYSINE) 4) C.G. S.X.
0.03 2e-5 50 Zea mays Zm.1174.1.A1_at CA401542 WNK6 - 1e-3 At1g64630 WNK10 (WITH NO LYSINE KINASE 10) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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