Gene omics information

Query gene ID At5g27970
Gene name binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4862.5At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
0.7888.6At1g76850844020SEC5A (EXOCYST COMPLEX COMPONENT SEC5)F:molecular_function unknown;P:pollen germination, pollen tube growth;C:cytosol, plasma membrane;MFPOVBS.X.H.G.
0.5974.7At3g33530823149transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:chloroplast;MOPFS.X.H.G.
0.5673.0At5g16280831488unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MFOPVS.X.H.G.
0.4862.5At5g11490831021adaptin family proteinF:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin adaptor complex;MFOPS.X.H.G.
0.4862.5At3g59770825146SAC9Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.S.X.H.G.
0.4457.2At5g18190831937protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVAS.X.H.G.
0.4457.2At3g61690825342unknown proteinF:unknown;P:unknown;C:unknown;OMPFBS.X.H.G.
0.4355.3At4g38200829976guanine nucleotide exchange family proteinF:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:chloroplast;MFOPBS.X.H.G.
0.4050.8At2g27900817335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.199.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.899.5GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.699.5GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.499.5GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.099.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.799.4GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.599.4GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.399.4GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
13.599.4GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.899.3GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.002e-140At1g32750840169HAF01This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.C.G.S.X.
0.016e-138At3g46700823823UDP-glycosyltransferase/ transferase, transferring glycosyl groupsF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOFC.G.S.X.
0.012e+036At5g41840834189F-box family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.012e+036At4g17480827459palmitoyl protein thioesterase family proteinF:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFOC.G.S.X.
0.012e+036At4g13680827002unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.012e+036At1g76350843967RWP-RK domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POBMC.G.S.X.
0.012e+036At1g20640838653RWP-RK domain-containing proteinF:transcription factor activity;P:nodulation;C:unknown;POMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.037e-20101Glycine maxGma.17796.1.S1_atBF597710--7e-21At5g27970bindingC.G.S.X.
0.011e+036Hordeum vulgareContig12244_atContig12244--5e-1At1g12663-C.G.S.X.
0.109e-1481Oryza sativaOs01g0772700NM_191435.1-ARM repeat fold domain containing protein4e-14At5g27970bindingC.G.S.X.
0.034e-656Populus trichocarpaPtpAffx.222720.1.S1_atpmrna40317hypothetical protein-7e+0At5g38344transmembrane receptorC.G.S.X.
0.016e-138Triticum aestivumTaAffx.107958.1.S1_atCA692856--5e-2At4g15790unknown proteinC.G.S.X.
0.011e-242Vitis vinifera1620774_atCB339523--1e+0At4g29280LCR22 (Low-molecular-weight cysteine-rich 22)C.G.S.X.
0.011e+036Zea maysZm.12679.1.S1_atBU571579hypothetical protein LOC100217156-7e-1At5g42510disease resistance-responsive family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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