Gene omics information

Query gene ID At5g27810
Gene name sequence-specific DNA binding / transcription factor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7788.0At5g27810832843sequence-specific DNA binding / transcription factorF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PS.X.H.G.
0.8994.6At1g54880841927unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8793.5At5g26620832728unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At5g14560831307unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At4g02970828121AT7SL-1 (Arabidopsis 7SL RNA 1)Signal recognition particle. Type 4 of RNA polymerase III dependent genes.S.X.H.G.
0.8592.4At2g13900815874DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOS.X.H.G.
0.8391.4At2g40440818638BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.8190.4At5g18160831934F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7989.1At5g66370836769unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFS.X.H.G.
0.7989.1At4g25510828655unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
610.9100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
540.2100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
421.3100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
407.0100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
382.7100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
336.6100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
327.4100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
302.3100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
275.2100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
261.9100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.449e-99359At5g48670834925AGL80 (AGAMOUS-LIKE 80)AGL80 is a member of the MADS box family of genes. AGL80 functions as a transcription factor within the central cell gene regulatory network and controls the expression of downstream genes required for central cell development and function.C.G.S.X.
0.023e-342At4g08540826413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFMOC.G.S.X.
0.011e-240At1g22610838867C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOFC.G.S.X.
0.024e-238At1g20130838602hydrolase, acting on ester bonds / lipase/ structural constituent of cell wallF:structural constituent of cell wall, lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:unknown;MBOFPVAC.G.S.X.
0.012e-136At2g20290816548XIGmember of Myosin-like proteinsC.G.S.X.
0.027e-134At5g03330831875OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MOPFVBC.G.S.X.
0.017e-134At3g18290821357EMB2454 (embryo defective 2454)F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:unknown;MPOFBVC.G.S.X.
0.017e-134At2g34780818043MEE22 (MATERNAL EFFECT EMBRYO ARREST 22)Encodes a novel protein of unknown function that is essential for embryonic development. Severe loss of function alleles are embryo lethal. Analysis of a partial loss of function allele indicates a role for EMB1611 in regulation of endoreduplication and maintenance of meristem cell fate. It appears to be required for maintaining the CLV-WUS regulatory pathway.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.051e+034Glycine maxGmaAffx.762.2.S1_atCA784179--8e-1At5g27810sequence-specific DNA binding / transcription factorC.G.S.X.
0.051e+032Hordeum vulgareHM09K22r_atHM09K22r--2e+0At5g27810sequence-specific DNA binding / transcription factorC.G.S.X.
0.035e+032Oryza sativaOsAffx.27239.2.S1_at---0C.G.S.X.
0.044e-342Populus trichocarpaPtpAffx.14042.1.A1_s_atCK090243hypothetical protein-6e-3At5g27810sequence-specific DNA binding / transcription factorC.G.S.X.
0.072e-136Triticum aestivumTa.21273.1.S1_s_atCA615208--4e-1At2g42460meprin and TRAF homology domain-containing protein / MATH domain-containing proteinC.G.S.X.
0.048e-132Vitis vinifera1609411_atCB970858hypothetical protein LOC100248459-5e+0At5g28491unknown proteinC.G.S.X.
0.041e+032Zea maysZm.8778.1.A1_atBM075597hypothetical protein LOC100191790-1e+0At3g29152-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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