CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g27560

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g27560 832816 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP S.X. H.G.
0.75 86.9 At5g57930 835904 APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) ACCUMULATION OF PHOTOSYSTEM ONE 2 S.X. H.G.
0.50 65.3 At3g07670 819958 SET domain-containing protein F:[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity;P:biological_process unknown;C:chloroplast;MFPO S.X. H.G.
0.44 57.2 At5g53580 835440 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast;BOMFPA S.X. H.G.
0.40 50.8 At5g45170 834553 CbbY protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO S.X. H.G.
0.40 50.8 At5g62790 836400 DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.6 99.5 GSM269824 T8 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
14.9 99.4 E-ATMX-35-raw-cel-1574334896
12.8 99.3 GSM269822 T6 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
12.1 99.3 E-ATMX-35-raw-cel-1574334928
9.7 99.1 GSM269826 C2 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
9.4 99.1 GSM131464 AtGen_6-9512_Heatstress(3h)+9hrecovery-Shoots-12.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
8.9 99.0 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
8.6 99.0 GSM269820 WT leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
8.4 99.0 GSM157392 Sakakibara_1-11_DMSO-treatment-mutant_Rep2_ATH1 GSE6832 Cytokinin treatment on aerial parts of seedlings
8.3 99.0 E-MEXP-285-raw-cel-440782853
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-4 48 At5g60120 836134 TOE2 F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POBV C.G. S.X.
0.02 1e-4 48 At5g52830 835360 WRKY27 Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum. C.G. S.X.
0.02 1e-4 48 At2g30280 817578 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.01 1e-4 48 At1g74180 843758 AtRLP14 (Receptor Like Protein 14) F:protein binding;P:signal transduction;C:chloroplast;PMOBFAV C.G. S.X.
0.03 1e-4 48 At1g02540 839516 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFVBPA C.G. S.X.
0.01 1e-4 48 At1g67140 843034 SWEETIE (SWEETIE) F:binding;P:trehalose metabolic process, carbohydrate metabolic process, starch metabolic process;C:cytosol;MOBFPVA C.G. S.X.
0.03 5e-4 46 At4g01895 827073 systemic acquired resistance (SAR) regulator protein NIMIN-1-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.02 5e-4 46 At1g66620 842980 seven in absentia (SINA) protein, putative F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVA C.G. S.X.
0.01 5e-4 46 At1g02660 839544 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;MOFPBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-15 83 Glycine max Gma.10991.1.S1_at BQ298821 - - 3e-15 At5g27560 unknown protein C.G. S.X.
0.04 4e-3 42 Hordeum vulgare HVSMEb0009P09r2_at HVSMEb0009P09r2 - - 4e+0 At1g55900 TIM50 C.G. S.X.
0.04 3e-4 48 Oryza sativa Os09g0496000 9637.m02815 - - 2e-1 At3g06000 leucine-rich repeat family protein C.G. S.X.
0.35 2e-35 151 Populus trichocarpa PtpAffx.13694.1.S1_at CV258952 hypothetical protein - 3e-27 At5g27560 unknown protein C.G. S.X.
0.05 5e-1 36 Triticum aestivum Ta.602.1.A1_at BE489391 - - 3e-1 At2g03440 nodulin-related C.G. S.X.
0.24 1e-14 79 Vitis vinifera 1618670_at BQ798857 hypothetical protein LOC100264831 - 2e-14 At5g27560 unknown protein C.G. S.X.
0.04 6e-2 38 Zea mays Zm.4415.1.A1_at BM080841 hypothetical protein LOC100274900 - 5e-3 At3g50550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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