CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g27530

Gene name glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.90 95.1 At5g27530 832813 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMVA S.X. H.G.
0.57 73.8 At5g49310 834991 IMPA-5 (IMPORTIN ALPHA ISOFORM 5) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. S.X. H.G.
0.57 73.8 At3g25960 822193 pyruvate kinase, putative F:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFA S.X. H.G.
0.56 73.0 At3g62520 3769771 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.54 69.5 At3g22250 821795 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMVBOF S.X. H.G.
0.54 69.5 At1g20800 838671 F-box family protein F-box family protein S.X. H.G.
0.49 63.5 At4g18770 827611 MYB98 (myb domain protein 98) MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects. S.X. H.G.
0.48 62.5 At2g44030 819008 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMBOFAV S.X. H.G.
0.47 61.2 At4g13570 826990 HTA4 Encodes HTA4, a histone H2A protein. S.X. H.G.
0.47 61.2 At2g02750 814804 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
362.3 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
261.0 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
201.7 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
198.2 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
184.1 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
181.3 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
156.2 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
133.9 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
125.2 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
123.6 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.54 2e-102 373 At4g35670 829719 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA C.G. S.X.
0.15 8e-13 75 At5g44840 834514 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.06 5e-8 59 At5g44830 834513 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA C.G. S.X.
0.04 2e-4 48 At1g23460 838954 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.02 3e-3 44 At3g57510 824918 ADPG1 Encodes ADPG1, a polygalacturonase protein involved in silique and anther dihiscence. Loss of function mutations have reduced seed set, indehiscent fruit and reduced pollen shedding. C.G. S.X.
0.01 4e-2 40 At3g54540 824619 ATGCN4 member of GCN subfamily C.G. S.X.
0.06 2e-1 38 At1g70500 843386 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.01 7e-1 36 At5g67240 836859 SDN3 (SMALL RNA DEGRADING NUCLEASE 3) F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBA C.G. S.X.
0.01 7e-1 36 At5g51200 835195 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPFO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 48 Glycine max Gma.8494.1.S1_at AF128266.1 polygalacturonase PG1 - 2e-8 At1g10640 polygalacturonase C.G. S.X.
0.03 3e-1 36 Hordeum vulgare HB31C18r_at HB31C18r - - 3e-1 At4g35670 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 9e-2 40 Oryza sativa Os07g0208100 AK119482.1 - Polygalacturonase A (Fragment) 7e-1 At1g10640 polygalacturonase C.G. S.X.
0.04 1e+0 36 Populus trichocarpa PtpAffx.222982.1.S1_at pmrna40736 hypothetical protein - 4e-42 At1g23460 polygalacturonase C.G. S.X.
0.03 7e-1 36 Triticum aestivum TaAffx.56906.1.S1_at CA640759 - - 8e-3 At1g10640 polygalacturonase C.G. S.X.
0.03 3e-6 52 Vitis vinifera 1617208_at AF159125.1 polygalacturonase - 8e-9 At5g14650 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.02 1e+0 34 Zea mays Zm.15509.1.A1_at AY109235.1 ligatin - 4e-10 At1g09150 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00412 Glycoside Hydrolase
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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