CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g27520

Gene name PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At5g27520 832812 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth. S.X. H.G.
0.50 65.3 At1g44350 841026 ILL6 encodes a protein similar to IAA amino acid conjugate hydrolase. S.X. H.G.
0.44 57.2 At3g05500 819715 rubber elongation factor (REF) family protein F:unknown;P:biological_process unknown;C:vacuole;P S.X. H.G.
0.40 50.8 At5g54170 835505 - F:molecular_function unknown;P:response to wounding;C:unknown;MPO S.X. H.G.
0.13 5.8 At1g30620 839942 MUR4 (MURUS 4) encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.9 99.9 E-MEXP-1443-raw-cel-1581869921
78.8 99.9 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
51.0 99.8 E-MEXP-546-raw-cel-863289532
47.3 99.8 E-MEXP-546-raw-cel-863289476
46.2 99.8 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
45.4 99.8 E-MEXP-546-raw-cel-863289424
42.9 99.8 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
39.5 99.8 GSM131147 AtGen_B-33_3-5-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
38.8 99.8 GSM205159 protoplast_KIN10_rep1 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
36.9 99.7 GSM142855 MG001_ATH1_A8-Torres-3N3 GSE6176 Impact of Type III effectors on plant defense responses
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.79 0 700 At3g05290 819693 PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1) encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth. C.G. S.X.
0.02 3e-2 40 At5g49500 835010 signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) F:7S RNA binding, mRNA binding, GTP binding;P:SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;BOAMFP C.G. S.X.
0.02 3e-2 40 At1g15310 838100 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins C.G. S.X.
0.02 1e-1 38 At5g07600 830653 oleosin / glycine-rich protein F:unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, endomembrane system, integral to membrane, membrane;BMOPFVA C.G. S.X.
0.01 5e-1 36 At4g11420 826746 EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. C.G. S.X.
0.02 5e-1 36 At2g28660 817415 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF C.G. S.X.
0.01 5e-1 36 At1g29730 839851 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 5e-1 36 At1g17370 838309 UBP1B (oligouridylate binding protein 1B) F:mRNA 3'-UTR binding;P:unknown;C:unknown;MPFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-8 61 Glycine max Gma.15227.1.S1_s_at CD402070 - - 1e-8 At5g27520 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) C.G. S.X.
0.07 6e-5 48 Hordeum vulgare HS06J22u_s_at HS06J22u - - 7e-5 At5g27520 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) C.G. S.X.
0.15 2e-5 52 Oryza sativa Os05g0392700 AK058728.1 - Mitochondrial substrate carrier family protein 2e-5 At5g27520 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) C.G. S.X.
0.21 5e-20 99 Populus trichocarpa PtpAffx.8717.3.S1_at CV270927 hypothetical protein - 4e-20 At5g27520 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) C.G. S.X.
0.16 9e-9 61 Triticum aestivum Ta.8407.1.S1_x_at BQ161853 - - 9e-9 At5g27520 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) C.G. S.X.
0.21 3e-15 81 Vitis vinifera 1610839_at CB982193 hypothetical protein LOC100244263 - 1e-14 At5g27520 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) C.G. S.X.
0.03 5e-2 38 Zea mays Zm.6649.1.S1_at CK370002 hypothetical protein LOC100191356 - 8e-4 At3g05290 PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0015866 The directed movement of ADP, adenosine diphosphate, into, out of, within or between cells.
X GO:0015867 The directed movement of ATP, adenosine triphosphate, into, out of, within or between cells.
X GO:0080024 The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants.
X GO:0006635 A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
C GO:0006839 Transport of substances into, out of or within a mitochondrion.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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