CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g27470

Gene name seryl-tRNA synthetase / serine--tRNA ligase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At5g27470 832806 seryl-tRNA synthetase / serine--tRNA ligase F:serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, seryl-tRNA aminoacylation;C:cytosol;OBMFAP S.X. H.G.
0.67 81.6 At1g64550 842763 ATGCN3 member of GCN subfamily S.X. H.G.
0.60 75.7 At4g26300 828736 emb1027 (embryo defective 1027) F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV S.X. H.G.
0.59 74.7 At1g16870 838258 mitochondrial 28S ribosomal protein S29-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.50 65.3 At3g57290 824896 EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation. S.X. H.G.
0.47 61.2 At3g62120 825385 tRNA synthetase class II (G, H, P and S) family protein F:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:membrane;BOMAFP S.X. H.G.
0.40 50.8 At1g04510 839503 transducin family protein / WD-40 repeat family protein F:ubiquitin-protein ligase activity, nucleotide binding;P:response to cadmium ion;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOBPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.1 99.2 GSM266662 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
9.8 99.1 GSM265427 Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.8 99.1 GSM265418 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.1 99.1 E-ATMX-13-raw-cel-1556149743
8.6 99.0 GSM265419 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.6 99.0 E-ATMX-13-raw-cel-1556149903
8.5 99.0 E-ATMX-13-raw-cel-1556149855
8.3 99.0 E-ATMX-13-raw-cel-1556149919
8.2 99.0 GSM266663 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
8.1 98.9 GSM265426 Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 7e-1 36 At5g43330 834351 malate dehydrogenase, cytosolic, putative F:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:plasma membrane;BOMPFA C.G. S.X.
0.01 7e-1 36 At3g20140 821557 CYP705A23 member of CYP705A C.G. S.X.
0.02 7e-1 36 At2g23970 816930 defense-related protein, putative F:unknown;P:defense response;C:endomembrane system;OBAFPMV C.G. S.X.
0.01 7e-1 36 At1g14300 837991 binding F:binding;P:biological_process unknown;C:cellular_component unknown;FMPO C.G. S.X.
0.01 3e+0 34 At5g43710 834391 glycoside hydrolase family 47 protein F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding;P:protein amino acid N-linked glycosylation;C:endomembrane system, membrane;MFOPB C.G. S.X.
0.02 3e+0 34 At5g57830 835893 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBA C.G. S.X.
0.02 3e+0 34 At4g34690 829621 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.02 3e+0 34 At4g16540 827353 heat shock protein-related F:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PBO C.G. S.X.
0.01 3e+0 34 At4g03190 828045 GRH1 (GRR1-LIKE PROTEIN 1) Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 2e-45 184 Glycine max Gma.9981.1.S1_at CD398725 - - 9e-46 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase C.G. S.X.
0.14 2e-14 79 Hordeum vulgare Contig5144_at Contig5144 - - 7e-14 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase C.G. S.X.
0.06 9e-2 40 Oryza sativa Os03g0198400 AK103101.1 - Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNAligase) (SerRS) (Fragment) 6e-2 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase C.G. S.X.
0.35 6e-45 182 Populus trichocarpa PtpAffx.17411.1.S1_at CV242125 hypothetical protein - 6e-45 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase C.G. S.X.
0.10 1e-5 52 Triticum aestivum Ta.20463.1.S1_at BT009342.1 - - 2e-5 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase C.G. S.X.
0.40 3e-34 145 Vitis vinifera 1613593_at CB975406 hypothetical protein LOC100261399 - 9e-34 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase C.G. S.X.
0.13 1e-9 63 Zea mays Zm.15927.1.S1_at CO523705 seryl-tRNA synthetase1 - 5e-9 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
C GO:0006434 The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00067 tRNA-charging-pathway

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00970 Aminoacyl-tRNA biosynthesis
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