Gene omics information

Query gene ID At5g27420
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVS.X.H.G.
0.7385.5At4g23810828481WRKY53member of WRKY Transcription Factor; Group IIIS.X.H.G.
0.6781.6At1g58420842211-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6176.7At1g24140839026matrixin family proteinF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAFS.X.H.G.
0.4659.8At2g25735817115unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
289.0100.0E-MEXP-807-raw-cel-1173273252
282.0100.0E-MEXP-807-raw-cel-1173273170
204.4100.0E-MEXP-807-raw-cel-1173273223
196.4100.0E-MEXP-807-raw-cel-1173273196
151.299.9E-MEXP-807-raw-cel-1173273144
129.899.9E-MEXP-807-raw-cel-1173272948
124.499.9GSM39196RRE1_Chitin2GSE2169rre1 and rre2 mutants
122.699.9GSM39203Col_Chitin1GSE2169rre1 and rre2 mutants
116.499.9E-MEXP-807-raw-cel-1173273116
116.099.9GSM39198RRE1_Chitin4GSE2169rre1 and rre2 mutants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.441e-48194At3g05200819684ATL6Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).C.G.S.X.
0.049e-652At1g35330840422zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.041e-448At4g09100826488zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.071e-448At1g22500838856zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.026e-446At1g72200843552zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.071e-138At2g34990818063zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.041e-138At2g35000818064zinc finger (C3HC4-type RING finger) family proteinE3 ligase-like protein induced by chitin oligomers.C.G.S.X.
0.021e-138At2g27940817338zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.025e-136At5g17600831626zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.038e-136Glycine maxGmaAffx.12608.1.A1_atBE583858--2e-1At3g46380unknown proteinC.G.S.X.
0.021e+034Hordeum vulgareContig18680_atContig18680--1e+0At4g38680GRP2 (GLYCINE RICH PROTEIN 2)C.G.S.X.
0.024e+034Oryza sativaOsAffx.28273.2.S1_s_at---0C.G.S.X.
0.092e-1377Populus trichocarpaPtpAffx.2225.1.S1_atBP935950--2e-9At3g05200ATL6C.G.S.X.
0.026e-136Triticum aestivumTa.4717.1.A1_atCD454628--3e-1At4g36420ribosomal protein L12 family proteinC.G.S.X.
0.031e-240Vitis vinifera1621816_atCF514840hypothetical protein LOC100257715-1e+0At5g55870unknown proteinC.G.S.X.
0.029e-134Zea maysZmAffx.1189.1.A1_atBE025258--8e-1At3g04181unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0043562A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of inorganic nitrogen.
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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