CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g27340

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At5g27340 832792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.89 94.6 At2g04870 815034 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM S.X. H.G.
0.78 88.6 At5g35290 833483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.67 81.6 At3g43150 823381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At3g50320 824194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At5g27190 3770742 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.63 78.1 At1g35614 840459 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.59 74.7 At1g44990 841064 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system S.X. H.G.
0.58 73.8 At4g08890 3769919 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1146.3 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
405.2 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
270.0 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
196.8 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
189.9 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
168.8 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
168.4 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
164.5 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
159.8 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
159.7 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 9e-2 38 At4g27040 828812 VPS22 F:molecular_function unknown;P:vesicle-mediated transport;C:ESCRT II complex;MFOP C.G. S.X.
0.04 9e-2 38 At1g35614 840459 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e+0 34 At5g45095 834542 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 1e+0 34 At4g20070 827752 ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase) The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis. C.G. S.X.
0.02 1e+0 34 At4g32610 829396 unknown protein F:unknown;P:unknown;C:mitochondrial matrix;MOFBPVA C.G. S.X.
0.02 1e+0 34 At4g17990 827524 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e+0 32 Glycine max PsAffx.C87000019_at PsAffx.C87000019 - - 3e+0 At5g27340 unknown protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig13185_at Contig13185 - - 5e-3 At3g18520 HDA15 C.G. S.X.
0.03 3e+0 34 Oryza sativa Os01g0368400 9629.m02584 - - 3e-1 At5g44450 methyltransferase C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.212150.1.S1_at pmrna23827 hypothetical protein - 4e-2 At3g04340 emb2458 (embryo defective 2458) C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.8026.1.S1_at CA639287 - - 3e+0 At5g27340 unknown protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1609605_at CF209617 - - 4e+0 At5g43580 serine-type endopeptidase inhibitor C.G. S.X.
0.02 6e-1 34 Zea mays Zm.11946.1.A1_at BM382035 - - 2e+0 At1g77093 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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