Gene omics information

Query gene ID At5g26920
Gene name CBP60G (CAM-BINDING PROTEIN 60-LIKE.G)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g26920832750CBP60G (CAM-BINDING PROTEIN 60-LIKE.G)Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.S.X.H.G.
0.7586.9At1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).S.X.H.G.
0.6781.6At5g13320831173PBS3 (AVRPPHB SUSCEPTIBLE 3)Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1), WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.S.X.H.G.
0.4457.2At4g38560830013-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBAFVS.X.H.G.
0.3338.1At1g73800---S.X.H.G.
0.3338.1At1g73805843716calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
245.8100.0E-MEXP-807-raw-cel-1173273144
212.9100.0GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
208.7100.0E-MEXP-807-raw-cel-1173273252
141.699.9E-MEXP-807-raw-cel-1173273170
140.799.9GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
128.399.9E-MEXP-807-raw-cel-1173273116
117.799.9E-MEXP-807-raw-cel-1173273060
95.099.9GSM128660Underwood_1-13_Cor-5x10e7-10h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
73.099.9E-MEXP-807-raw-cel-1173273088
72.799.9E-ATMX-25-raw-cel-1441077517
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-242At5g62570836377calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e-138At2g472208193353' exoribonuclease family domain 1 protein-relatedF:3'-5'-exoribonuclease activity, oxidoreductase activity, RNA binding;P:metabolic process, RNA processing;C:unknown;BOPMAFVC.G.S.X.
0.018e-136At5g46840834728RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBVAC.G.S.X.
0.028e-136At5g57580835862calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.018e-136At3g20350821579unknown proteinF:unknown;P:biological_process unknown;C:plasma membrane;MOFBPAVC.G.S.X.
0.018e-136At2g16500816149ADC1 (ARGININE DECARBOXYLASE 1)encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Promoter region of ADC1 contains 742-bp AT-rich transposable element, called AtATE, that belongs to the MITE families of repetitive elements.C.G.S.X.
0.023e+034At5g59510836070RTFL5 (ROTUNDIFOLIA LIKE 5)F:molecular_function unknown;P:shoot development;C:cellular_component unknown;PMFOBC.G.S.X.
0.013e+034At5g17050831568UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxGmaAffx.24564.1.S1_atBU763867--2e-1At4g39940AKN2 (APS-kinase 2)C.G.S.X.
0.022e+034Hordeum vulgarerbags21p23_atrbags21p23--1e+0At1g06910TRFL7 (TRF-LIKE 7)C.G.S.X.
0.022e-346Oryza sativaOs02g0177800AK065684.1-Calmodulin-binding protein6e-21At2g18750calmodulin-binding proteinC.G.S.X.
0.011e+036Populus trichocarpaPtpAffx.95296.1.A1_atCV253528hypothetical protein-3e-1At4g25830integral membrane family proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.38010.1.A1_atBJ255269--5e+0At1g11650RNA-binding protein 45 (RBP45), putativeC.G.S.X.
0.023e-136Vitis vinifera1621044_atCB004222--8e-18At5g61140DEAD box RNA helicase, putativeC.G.S.X.
0.021e+034Zea maysZmAffx.1088.1.A1_atAW037041--2e-1At3g30845unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0002237A change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin.
XGO:0009617A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.
XGO:0009697The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid.
XGO:0009816A response of an organism to a bacterium that prevents the occurrence or spread of disease.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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