Gene omics information

Query gene ID At5g26900
Gene name WD-40 repeat family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g26900832748WD-40 repeat family proteinF:signal transducer activity;P:signal transduction;C:heterotrimeric G-protein complex;MFBOPAS.X.H.G.
0.5673.0At1g417973767199transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5469.5At5g45570834593Ulp1 protease family proteinF:peptidase activity, cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;POMBFAS.X.H.G.
0.4963.5At1g60280842323ANAC023 (Arabidopsis NAC domain containing protein 23)F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PS.X.H.G.
0.4963.5At1g57906842163-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4862.5At3g28280822454-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4862.5At5g27810832843sequence-specific DNA binding / transcription factorF:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PS.X.H.G.
0.4761.2At3g04990819659-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.4558.3At1g29570839834zinc finger protein-relatedF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOBFPVAS.X.H.G.
0.4558.3At3g45570823699zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
931.1100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
650.8100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
600.4100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
571.6100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
498.7100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
462.1100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
336.6100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
241.0100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
223.4100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
201.8100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.9402266At5g27080832766WD-40 repeat family proteinF:signal transducer activity;P:signal transduction;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPAC.G.S.X.
0.8801852At5g27570832817WD-40 repeat family proteinF:signal transducer activity;P:signal transduction;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPAC.G.S.X.
0.6501382At5g27945832862transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:anaphase-promoting complex, heterotrimeric G-protein complex;MFBOPAC.G.S.X.
0.700862At4g33260829462CDC20.2putative cdc20 protein (CDC20.2)C.G.S.X.
0.700850At4g33270829463CDC20.1putative cdc20 protein (CDC20.1)C.G.S.X.
0.027e-136At3g06230819797ATMKK8member of MAP Kinase KinaseC.G.S.X.
0.013e+034At5g61070836228HDA18Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.C.G.S.X.
0.013e+034At5g61060836227HDA05 (HISTONE DEACETYLASE 5)Encodes a member of the histone deacetylase family.C.G.S.X.
0.013e+034At5g62110836331DNA bindingF:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.121e-1585Glycine maxGmaAffx.79146.1.S1_atCA782170--9e-44At4g33260CDC20.2C.G.S.X.
0.108e-238Hordeum vulgareContig10438_atContig10438--2e-14At4g33260CDC20.2C.G.S.X.
0.176e-963Oryza sativaOs09g02423009637.m00423-WD-repeat protein3e-6At4g33270CDC20.1C.G.S.X.
0.263e-1067Populus trichocarpaPtpAffx.56737.2.A1_atCX174790hypothetical protein-3e-41At4g33260CDC20.2C.G.S.X.
0.043e+034Triticum aestivumTa.26410.1.A1_atCD490725--1e-6At4g33260CDC20.2C.G.S.X.
0.022e-136Vitis vinifera1619957_atCD718526hypothetical protein LOC100250062-3e-1At5g41720-C.G.S.X.
0.145e-961Zea maysZm.5421.1.S1_atBM350011--3e-13At4g33270CDC20.1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
04120Link to KEGG PATHWAYUbiquitin mediated proteolysis
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