CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g25940

Gene name early nodulin-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g25940 832663 early nodulin-related F:molecular_function unknown;P:unknown;C:mitochondrion;P S.X. H.G.
0.55 70.6 At3g47810 823935 MAG1 (MAIGO 1) Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. S.X. H.G.
0.52 67.4 At5g20090 832131 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, membrane;MFPO S.X. H.G.
0.50 65.3 At1g63460 842652 glutathione peroxidase, putative F:glutathione peroxidase activity;P:response to oxidative stress;C:cellular_component unknown;OBMPFV S.X. H.G.
0.45 58.3 At4g02620 828221 vacuolar ATPase subunit F family protein F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MFOPA S.X. H.G.
0.43 55.3 At2g02510 814780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PF S.X. H.G.
0.42 53.9 At1g08480 837369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, plastid, vacuole;P S.X. H.G.
0.41 52.4 At1g26550 839195 peptidyl-prolyl cis-trans isomerase PPIC-type family protein F:isomerase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA S.X. H.G.
0.41 52.4 At4g37830 829939 cytochrome c oxidase-related F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPO S.X. H.G.
0.41 52.4 At2g20820 816613 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
50.1 99.8 GSM226548 Slice6JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
28.9 99.7 GSM226553 Slice11JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
27.7 99.7 GSM142906 WW002_ATH1_A2-willa-ISOX-REP2 GSE6181 Assembly of the cell wall pectic matrix.
25.7 99.7 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
25.0 99.6 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
20.9 99.6 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
20.8 99.6 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.0 99.6 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
18.4 99.5 GSM226542 L12SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.4 99.5 GSM226550 Slice8JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 7e-1 34 At1g33250 840219 fringe-related protein F:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFO C.G. S.X.
0.04 7e-1 34 At1g51510 841576 Y14 This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm. C.G. S.X.
0.02 7e-1 34 At1g56190 842072 phosphoglycerate kinase, putative F:phosphoglycerate kinase activity;P:response to cadmium ion, glycolysis;C:thylakoid, mitochondrion, chloroplast stroma, chloroplast, membrane;OBPMAF C.G. S.X.
0.02 3e+0 32 At5g02130 831694 NDP1 (RANDOM POTATO CDNA CLONE) mutant has Growth rate reduction, increased salt sensitivity; Putative Kinesin Light Chain C.G. S.X.
0.04 3e+0 32 At4g12140 826822 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV C.G. S.X.
0.03 3e+0 32 At2g29630 817513 THIC (ThiaminC) Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-7 56 Glycine max GmaAffx.84535.1.S1_s_at BE609257 - - 3e-7 At5g25940 early nodulin-related C.G. S.X.
0.11 8e-5 46 Hordeum vulgare Contig7703_at Contig7703 - - 4e-4 At5g25940 early nodulin-related C.G. S.X.
0.07 2e-5 50 Oryza sativa Os02g0227200 AB018377.1 - Early nodulin 2e-5 At5g25940 early nodulin-related C.G. S.X.
0.07 1e-9 63 Populus trichocarpa Ptp.2168.1.S1_at CA927090 - - 2e-9 At5g25940 early nodulin-related C.G. S.X.
0.10 1e-2 40 Triticum aestivum Ta.2360.1.S1_at BJ271661 - - 3e-2 At5g25940 early nodulin-related C.G. S.X.
0.05 1e+1 28 Vitis vinifera 1620967_at CF211482 hypothetical protein LOC100256944 - 6e+0 At5g53360 seven in absentia (SINA) family protein C.G. S.X.
0.14 2e-11 67 Zea mays Zm.4143.1.A1_at BQ779421 monooxygenase/ oxidoreductase - 1e-10 At5g25940 early nodulin-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage