CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g25820

Gene name exostosin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.58 73.8 At5g25820 832651 exostosin family protein F:catalytic activity;P:unknown;C:membrane;OMPBFVA S.X. H.G.
0.59 74.7 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF S.X. H.G.
0.58 73.8 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB S.X. H.G.
0.55 70.6 At3g04570 819613 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;BPMOFVA S.X. H.G.
0.52 67.4 At2g45430 819151 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMFBO S.X. H.G.
0.51 66.3 At2g35270 818094 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA S.X. H.G.
0.50 65.3 At5g18860 832004 inosine-uridine preferring nucleoside hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA S.X. H.G.
0.48 62.5 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b S.X. H.G.
0.47 61.2 At1g50560 841477 CYP705A25 member of CYP705A S.X. H.G.
0.46 59.8 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
104.7 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
97.5 99.9 GSM133958 Fukuda_1-3_2A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
93.0 99.9 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
89.4 99.9 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
83.5 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
55.9 99.8 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
45.4 99.8 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
41.0 99.8 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
35.8 99.7 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
35.1 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 5e-15 83 At5g11610 831033 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF C.G. S.X.
0.11 1e-12 75 At5g19670 832087 exostosin family protein F:catalytic activity;P:biological_process unknown;C:membrane;PMOBF C.G. S.X.
0.12 7e-11 69 At4g32790 829415 exostosin family protein F:catalytic activity;P:biological_process unknown;C:mitochondrion, membrane;PMOBVF C.G. S.X.
0.04 1e-3 46 At5g37000 833670 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF C.G. S.X.
0.02 4e-3 44 At5g03795 3770626 - F:unknown;P:unknown;C:membrane;PMOBF C.G. S.X.
0.01 6e-2 40 At5g11130 830981 exostosin family protein F:catalytic activity;P:unknown;C:membrane;PMOBF C.G. S.X.
0.04 2e-1 38 At4g16745 827378 exostosin family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOBF C.G. S.X.
0.01 2e-1 38 At3g46170 823760 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:response to cadmium ion;C:cellular_component unknown;BOMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-18 95 Glycine max Gma.12877.1.S1_at BQ296365 - - 4e-19 At5g25820 exostosin family protein C.G. S.X.
0.04 8e-3 42 Hordeum vulgare Contig17298_at Contig17298 - - 2e-6 At5g19670 exostosin family protein C.G. S.X.
0.04 5e-1 38 Oryza sativa Os01g0107700 AK070027.1 - LIMONENE cyclase like protein 3e-1 At5g25820 exostosin family protein C.G. S.X.
0.23 1e-28 129 Populus trichocarpa PtpAffx.62804.1.S1_at CK091651 hypothetical protein - 1e-14 At4g32790 exostosin family protein C.G. S.X.
0.02 7e-2 40 Triticum aestivum TaAffx.32132.1.S1_at CA600413 - - 2e-5 At4g16745 exostosin family protein C.G. S.X.
0.08 4e-19 95 Vitis vinifera 1620481_at BQ792437 - - 1e-9 At4g32790 exostosin family protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.244.2.A1_at CF630454 - - 4e+0 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification
00439 Rhamnogalacturonan I biosynthesis
00441 Rhamnogalacturonan II biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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