CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g25460

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.32 35.7 At5g25460 832620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB S.X. H.G.
0.13 5.8 At2g47930 819405 AGP26 (ARABINOGALACTAN PROTEIN 26) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA S.X. H.G.
0.12 4.9 At3g12610 820441 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100) Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. S.X. H.G.
0.08 2.3 At2g06850 815247 EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) endoxyloglucan transferase (EXGT-A1) gene S.X. H.G.
0.04 0.9 At3g20820 821630 leucine-rich repeat family protein F:protein binding;P:signal transduction, defense response;C:apoplast, cell wall, chloroplast, membrane;PMOBFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.9 99.6 E-MEXP-849-raw-cel-1181980990
19.7 99.6 E-MEXP-849-raw-cel-1181980998
19.5 99.6 GSM133316 RIKEN-LI3B GSE5701 AtGenExpress: Basic hormone treatment of seeds
16.5 99.5 GSM133318 RIKEN-LI4B GSE5701 AtGenExpress: Basic hormone treatment of seeds
16.4 99.5 E-MEXP-849-raw-cel-1181981030
16.1 99.5 E-MEXP-849-raw-cel-1181980982
15.9 99.5 GSM133314 RIKEN-LI2B GSE5701 AtGenExpress: Basic hormone treatment of seeds
14.9 99.4 GSM133312 RIKEN-LI1B GSE5701 AtGenExpress: Basic hormone treatment of seeds
14.7 99.4 E-MEXP-849-raw-cel-1181981006
14.5 99.4 GSM133322 RIKEN-LI6B GSE5701 AtGenExpress: Basic hormone treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.74 3e-132 472 At5g11420 831013 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P C.G. S.X.
0.32 3e-27 123 At4g32460 829381 - F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB C.G. S.X.
0.05 6e-4 46 At1g80240 844364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB C.G. S.X.
0.05 4e-2 40 At3g08030 819994 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cell wall;PB C.G. S.X.
0.02 1e-1 38 At1g29980 839877 - F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB C.G. S.X.
0.04 5e-1 36 At2g34510 818014 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-5 52 Glycine max Gma.12342.3.S1_at BQ081225 - - 1e-5 At5g25460 unknown protein C.G. S.X.
0.02 4e-3 42 Hordeum vulgare Contig10884_at Contig10884 - - 3e-3 At5g17510 unknown protein C.G. S.X.
0.02 7e-2 40 Oryza sativa Os01g0772200 AK060471.1 - The start codon is not identified. 7e-4 At1g75510 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein C.G. S.X.
0.18 3e-9 63 Populus trichocarpa Ptp.5205.1.S1_at BU888886 hypothetical protein - 3e-9 At5g25460 unknown protein C.G. S.X.
0.02 6e-1 36 Triticum aestivum Ta.27499.1.A1_at BT009322.1 - - 1e+1 At5g03550 - C.G. S.X.
0.03 7e-7 54 Vitis vinifera 1619831_a_at BQ794924 hypothetical protein LOC100252479 - 6e-10 At4g32460 - C.G. S.X.
0.03 9e-1 34 Zea mays Zm.17666.1.A1_at CF635462 hypothetical protein LOC100272483 - 2e+0 At5g25460 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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