Gene omics information

Query gene ID At5g25370
Gene name PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g25370832609PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.S.X.H.G.
1.00100.0At1g61760842473harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
1.00100.0At2g14620815950xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOS.X.H.G.
1.00100.0At3g03200821226anac045 (Arabidopsis NAC domain containing protein 45)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMBS.X.H.G.
1.00100.0At3g18670821398ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPBFAVS.X.H.G.
1.00100.0At5g48690834927-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
1.00100.0At5g67050836840lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMVS.X.H.G.
0.9998.1At1g77700844106pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOVS.X.H.G.
0.9998.1At2g34530818016unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9998.1At3g10680820237heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1487.9100.0GSM184905Arabidopsis, root cells, protophloem, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
1105.1100.0GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
983.2100.0GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
930.1100.0GSM184906Arabidopsis, root cells, protophloem, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
190.9100.0GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
126.199.9GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
57.899.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
28.899.7GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
19.499.6GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
17.799.5GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.104e-25117At1g52570841689PLDALPHA2 (phosphlipase d alpha 2)member of C2-PLD subfamilyC.G.S.X.
0.062e-1171At3g15730820816PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis.C.G.S.X.
0.025e-963At1g55180841961PLDEPSILON (PHOSPHOLIPASE D ALPHA 4)member of C2-PLD. subfamily Represents a phospholipase D (PLD) gene with four exons, hence it is a member of the alpha class. Its amino acid sequence is quite different from other PLDs, therefore it might possess unique structural and/or catalytic properties.C.G.S.X.
0.015e-654At4g11850826791PLDGAMMA1phospholipase D (gamma)C.G.S.X.
0.015e-654At4g11830826789PLDGAMMA2Encodes one of three phospholipase D enzymes of the gamma class.C.G.S.X.
0.011e-346At4g11840826790PLDGAMMA3member of C2-PLD subfamilyC.G.S.X.
0.031e-346At4g00240826673PLDBETA2member of C2-PLD subfamilyC.G.S.X.
0.025e-344At2g42010818802PLDBETA1 (PHOSPHOLIPASE D BETA 1)phospholipase D (PLDbeta)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.098e-963Glycine maxGma.5503.1.S1_atCD405755--8e-50At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)C.G.S.X.
0.062e-1377Hordeum vulgareContig3043_atContig3043--8e-33At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)C.G.S.X.
0.073e-1585Oryza sativaOs06g0604400AK072121.1-Phospholipase D alpha 2 (EC 3.1.4.4) (PLD alpha 2)(Choline phosphatase 2) (Phosphatidylcholine-hydrolyzingphospholipase D 2)8e-21At1g52570PLDALPHA2 (phosphlipase d alpha 2)C.G.S.X.
0.131e-759Populus trichocarpaPtpAffx.206792.1.S1_atpmrna13481hypothetical protein-4e-19At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)C.G.S.X.
0.072e-1171Triticum aestivumTa.25895.1.A1_atCD454156--6e-12At5g25370PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)C.G.S.X.
0.062e-859Vitis vinifera1616981_atCB971105phospholipase D alpha-4e-52At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)C.G.S.X.
0.079e-961Zea maysZm.50.1.A1_atD73410.1phospholipase D-6e-34At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
XGO:0046466The chemical reactions and pathways resulting in the breakdown of membrane lipids, any lipid found in or associated with a biological membrane.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00564Link to KEGG PATHWAYGlycerophospholipid metabolism
00565Link to KEGG PATHWAYEther lipid metabolism
01100Link to KEGG PATHWAYMetabolic pathways
04144Link to KEGG PATHWAYEndocytosis
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