CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g25250

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At5g25250 832596 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAV S.X. H.G.
0.56 73.0 At1g57630 842139 disease resistance protein (TIR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.38 46.7 At4g23210 828420 protein kinase family protein Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. S.X. H.G.
0.31 33.8 At2g35980 818171 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. S.X. H.G.
0.25 22.6 At1g26380 839180 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM S.X. H.G.
0.23 19.3 At1g51890 841616 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.19 12.7 At2g42360 818837 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
197.7 100.0 E-MEXP-1094-raw-cel-1379507273
127.3 99.9 E-MEXP-1094-raw-cel-1379507313
103.5 99.9 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
91.6 99.9 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
91.5 99.9 GSM142839 MG001_ATH1_A18-Torres-6N6 GSE6176 Impact of Type III effectors on plant defense responses
89.9 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
86.6 99.9 GSM131139 AtGen_B-25_2-4-4_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
71.9 99.9 GSM39214 RRE2_Chitin4 GSE2169 rre1 and rre2 mutants
65.4 99.8 GSM39211 RRE2_Chitin1 GSE2169 rre1 and rre2 mutants
64.6 99.8 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 0 1673 At5g25260 832597 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;BOMFPAV C.G. S.X.
0.74 0 757 At5g64870 836610 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPA C.G. S.X.
0.01 2e-1 38 At4g03450 827913 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPFBVA C.G. S.X.
0.01 2e-1 38 At1g29320 839806 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MOFBPVA C.G. S.X.
0.01 7e-1 36 At4g25920 828698 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 3e+0 34 At5g66250 836757 kinectin-related F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 3e+0 34 At5g46070 834648 GTP binding / GTPase F:GTP binding, GTPase activity;P:immune response;C:nucleolus, chloroplast;MOBFPAV C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 5e-18 93 Glycine max Gma.144.1.S1_at AF065435.1 nodulin - 2e-48 At5g64870 - C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HS16I24u_at HS16I24u - - 3e-1 At5g66250 kinectin-related C.G. S.X.
0.04 1e-3 46 Oryza sativa OsAffx.20242.1.S1_at - - - 0 C.G. S.X.
0.17 3e-16 87 Populus trichocarpa PtpAffx.124650.1.S1_at CK107606 hypothetical protein - 1e-18 At5g64870 - C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.52298.1.S1_at CA709829 - - 1e+0 At2g21030 - C.G. S.X.
0.04 9e-4 44 Vitis vinifera 1606721_at CF414487 - - 2e-1 At5g64870 - C.G. S.X.
0.02 5e-3 42 Zea mays Zm.6732.1.S1_s_at AF440221.1 HMG-like nucleosome/chromatin assembly factor D - 3e-11 At1g20696 HMGB3 (HIGH MOBILITY GROUP B 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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