CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g25090

Gene name plastocyanin-like domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.51 66.3 At5g25090 832580 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P S.X. H.G.
0.74 86.1 At5g11690 831041 ATTIM17-3 mitochondrial inner membrane translocase S.X. H.G.
0.72 84.8 At5g37580 - - - S.X. H.G.
0.71 84.2 At1g77110 844046 PIN6 (PIN-FORMED 6) Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux. S.X. H.G.
0.70 83.5 At5g65450 836670 UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17) Encodes a ubiquitin-specific protease. S.X. H.G.
0.69 82.9 At4g17610 827480 tRNA/rRNA methyltransferase (SpoU) family protein F:RNA binding, RNA methyltransferase activity;P:RNA processing;C:endomembrane system;BOMPFA S.X. H.G.
0.67 81.6 At1g04730 839431 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMFBAPV S.X. H.G.
0.67 81.6 At5g49000 834959 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVAF S.X. H.G.
0.63 78.1 At1g17450 838317 - F:molecular_function unknown;P:unknown;C:unknown;POB S.X. H.G.
0.63 78.1 At3g14330 820653 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
691.1 100.0 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
134.8 99.9 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
116.2 99.9 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
70.0 99.9 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
46.1 99.8 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.6 99.7 GSM131652 ATGE_8_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
25.4 99.6 GSM131653 ATGE_8_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
22.5 99.6 E-TABM-19-raw-cel-489757107
22.0 99.6 E-MEXP-1799-raw-cel-1665601167
21.4 99.6 E-MEXP-1797-raw-cel-1669767958
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 2e-2 40 At4g31840 829313 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;P C.G. S.X.
0.02 7e-2 38 At5g50000 835064 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.02 7e-2 38 At5g18520 831970 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB C.G. S.X.
0.02 3e-1 36 At5g54810 835571 TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1) A.thaliana tryptophan synthase beta subunit (trpB) C.G. S.X.
0.01 3e-1 36 At2g42580 818858 TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) Encodes a member of the TTL family and contains a thioredoxin like domain and three tandom TPRs. Interacts physically with BRL2/VH1 and appears to play a role in brassiosteroid and auxin signaling. C.G. S.X.
0.02 3e-1 36 At1g17060 838276 CYP72C1 (CYTOCHROME P450 72C1) Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls. C.G. S.X.
0.02 1e+0 34 At5g37690 833748 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOM C.G. S.X.
0.02 1e+0 34 At5g50140 835079 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-1 38 Glycine max HgAffx.17373.1.S1_at CB278983 - - 8e-1 At1g16916 unknown protein C.G. S.X.
0.04 5e-1 34 Hordeum vulgare Contig6390_at Contig6390 - - 2e-3 At1g62240 unknown protein C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.21994.1.S1_at - - - 0 C.G. S.X.
0.04 4e-1 36 Populus trichocarpa Ptp.6641.1.S1_s_at CV253874 hypothetical protein - 1e-7 At2g25060 plastocyanin-like domain-containing protein C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.78140.1.S1_at CA737007 - - 2e+0 At2g26020 PDF1.2b (plant defensin 1.2b) C.G. S.X.
0.06 8e-2 36 Vitis vinifera 1620623_at CF215757 hypothetical protein LOC100249108 - 4e-1 At5g25090 plastocyanin-like domain-containing protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.15276.1.A1_at BM379849 - - 3e-3 At1g12665 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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