Gene omics information

Query gene ID At5g24830
Gene name pentatricopeptide (PPR) repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g24830832552pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAS.X.H.G.
0.5065.3At5g12260831101-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBS.X.H.G.
0.2930.3At4g17020827410transcription factor-relatedF:RNA polymerase II transcription factor activity;P:DNA repair, regulation of transcription, DNA-dependent;C:endomembrane system, nucleus;MFOPS.X.H.G.
0.114.1At5g24710832542-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPVAS.X.H.G.
0.071.9At5g59710836092VIP2 (VIRE2 INTERACTING PROTEIN2)Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
94.299.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
76.299.9GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
73.299.9GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
63.099.8GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
57.699.8GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
53.199.8GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
48.699.8GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
46.199.8GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
44.899.8GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
44.699.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-344At1g22960838903pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBAC.G.S.X.
0.016e-240At3g16710820923-F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.022e-138At5g46680834711pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAC.G.S.X.
0.012e-138At5g53440835425unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAC.G.S.X.
0.012e-138At4g19000827636IWS1 C-terminus family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAC.G.S.X.
0.012e-138At3g16030820848CES101 (CALLUS EXPRESSION OF RBCS 101)F:in 7 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.012e-138At3g49740824136pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:unknown;POFMBC.G.S.X.
0.012e-138At2g17060816211disease resistance protein (TIR-NBS-LRR class), putativeF:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAVC.G.S.X.
0.012e-138At1g79540844292pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxGmaAffx.87427.1.S1_atAW757219--2e-2At3g06430EMB2750 (embryo defective 2750)C.G.S.X.
0.014e-136Hordeum vulgareContig17533_atContig17533--2e-1At3g25011unknown proteinC.G.S.X.
0.022e+036Oryza sativaOs04g0499800AK121326.1-Conserved hypothetical protein2e+0At1g62530unknown proteinC.G.S.X.
0.033e-138Populus trichocarpaPtpAffx.218165.1.S1_atpmrna33700hypothetical protein-2e-1At5g24830pentatricopeptide (PPR) repeat-containing proteinC.G.S.X.
0.024e+034Triticum aestivumTa.1396.2.A1_atCA653062--4e+0At2g31081CLE4 (CLAVATA3/ESR-RELATED 4)C.G.S.X.
0.023e-136Vitis vinifera1614400_atCF405225--2e-1At2g0381018S pre-ribosomal assembly protein gar2-relatedC.G.S.X.
0.022e+034Zea maysZmAffx.672.1.A1_atAI734437--3e+0At5g62470MYB96 (myb domain protein 96)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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