Gene omics information

Query gene ID At5g24770
Gene name VSP2 (VEGETATIVE STORAGE PROTEIN 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6982.9At5g24770832546VSP2 (VEGETATIVE STORAGE PROTEIN 2)Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.S.X.H.G.
0.4862.5At1g52030841632MBP2 (MYROSINASE-BINDING PROTEIN 2)Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers.S.X.H.G.
0.3745.0At1g24070839019ATCSLA10encodes a gene similar to cellulose synthaseS.X.H.G.
0.3745.0At2g33810817948SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It binds DNA, may directly regulate AP1, and is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.S.X.H.G.
0.3541.6At5g20740832197invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.3235.7At3g15270820758SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.S.X.H.G.
0.3133.8At2g42200818820SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9)Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b.S.X.H.G.
0.2726.2At3g06160819790transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POS.X.H.G.
0.2217.5At1g52410841671TSA1 (TSK-ASSOCIATING PROTEIN 1)Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.S.X.H.G.
0.2115.8At1g27360839625squamosa promoter-binding protein-like 11 (SPL11)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
63.999.8GSM128784Somerville_1-7_flower-GH6_Rep2_ATH1GSE5533Tissue Type Arrays of Columbia-0
39.599.8GSM128783Somerville_1-6_flower-GH5_Rep1_ATH1GSE5533Tissue Type Arrays of Columbia-0
38.699.8GSM242953Mock day 1 (day1E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
37.899.8E-TABM-63-raw-cel-681137339
36.799.7GSM128782Somerville_1-5_flower-GC6_Rep2_ATH1GSE5533Tissue Type Arrays of Columbia-0
32.699.7E-TABM-63-raw-cel-681136835
29.799.7GSM128781Somerville_1-4_flower-GC5_Rep1_ATH1GSE5533Tissue Type Arrays of Columbia-0
29.099.7E-TABM-63-raw-cel-681137160
28.499.7E-TABM-63-raw-cel-681136686
27.999.7E-TABM-63-raw-cel-681137230
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.830638At5g24780832547VSP1 (VEGETATIVE STORAGE PROTEIN 1)encodes an acid phosphatase similar to soybean vegetative storage proteins. Gene expression is induced by wounding and jasmonic acid.C.G.S.X.
0.023e-240At3g02710821269nuclear associated protein-related / NAP-relatedEncodes a protein with a putative role in mRNA splicing.C.G.S.X.
0.021e-138At4g26500828756CPSUFE (CHLOROPLAST SULFUR E)Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis.C.G.S.X.
0.012e+034At4g16760827381ACX1 (ACYL-COA OXIDASE 1)Encodes a medium to long-chain acyl-CoA oxidase. Catalyzes the first step of fatty acid beta-oxidation. Involved in jasmonate biosynthesis. Gene expression is induced by wounding, drought stress, abscisic acid, and jasmonate.C.G.S.X.
0.012e+034At4g20270827774BAM3 (BARELY ANY MERISTEM 3)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function.C.G.S.X.
0.012e+034At3g13930820606dihydrolipoamide S-acetyltransferase, putativeF:dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity;P:pyruvate metabolic process, metabolic process;C:mitochondrion, chloroplast, chloroplast envelope;OBMFPAC.G.S.X.
0.026e+032At5g58780835992dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-136Glycine maxGmaAffx.22641.1.S1_atBG362680--2e-1At5g24770VSP2 (VEGETATIVE STORAGE PROTEIN 2)C.G.S.X.
0.033e+032Hordeum vulgareContig8776_s_atContig8776--1e+0Atmg00920-C.G.S.X.
0.023e+034Oryza sativaOs03g01318009631.m00310--2e-5At1g16210unknown proteinC.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.223826.1.S1_atpmrna42037hypothetical protein-5e-1At5g24770VSP2 (VEGETATIVE STORAGE PROTEIN 2)C.G.S.X.
0.032e+034Triticum aestivumTaAffx.107751.1.S1_atCA695982--1e+0At5g24770VSP2 (VEGETATIVE STORAGE PROTEIN 2)C.G.S.X.
0.031e-136Vitis vinifera1619606_x_atCF204470.1--3e-1At5g24770VSP2 (VEGETATIVE STORAGE PROTEIN 2)C.G.S.X.
0.023e+032Zea maysZm.12552.1.A1_atCF628910hypothetical protein LOC100275462 /// hypothetical protein LOC100278677-4e+0At5g24770VSP2 (VEGETATIVE STORAGE PROTEIN 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0002213A response to protect an organism from a directly detected or perceived external threat from an insect or insects to that organism.
XGO:0009611A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
XGO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
XGO:0009625A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an insect.
XGO:0010149A preprogrammed process associated with the dismantling of an anatomical structure and an overall decline in metabolism. This may include the breakdown of organelles, membranes and other cellular components. An example of this process is found in Arabidopsis thaliana, when older leaves or floral organs are shed.
XGO:0042538A change in state or activity of a cell or an organism or cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
XGO:0046688A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus.
SGO:0009753A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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