Gene omics information

Query gene ID At5g24740
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g24740832543-F:unknown;P:protein localization;C:unknown;MOFPS.X.H.G.
0.3643.6At5g09880830848RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MOFPBVAS.X.H.G.
0.3338.1At5g61140836235DEAD box RNA helicase, putativeEncodes a predicted protein with 30% identity with MER3/RCK.S.X.H.G.
0.3133.8At2g46560819268transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOPS.X.H.G.
0.2930.3At3g57570824924bindingF:binding;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.2624.4At1g32490840143ESP3 (ENHANCED SILENCING PHENOTYPE 3)Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing.S.X.H.G.
0.2217.5At1g02080839244transcriptional regulator-relatedF:transcription regulator activity;P:unknown;C:membrane;MOFBPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
47.699.8GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
33.899.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.999.7GSM142905WW002_ATH1_A1-willa-CON-REP3GSE6181Assembly of the cell wall pectic matrix.
24.499.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
23.099.6GSM142906WW002_ATH1_A2-willa-ISOX-REP2GSE6181Assembly of the cell wall pectic matrix.
21.999.6GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
21.099.6GSM270814Arabidopsis cell culture, 4 h_control_rep1GSE10719Response of Arabidopsis cell culture to phytoprostane A1
19.799.6GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.599.5GSM142646MC002_ATH1_A8.3-dubos-aihGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.399.5GSM142907WW002_ATH1_A2-willa-ISOX-REP3GSE6181Assembly of the cell wall pectic matrix.
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.001e+038At5g61200836241-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
0.001e+038At5g06830830574unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPABFC.G.S.X.
0.001e+038At4g054946240450unknown proteinF:unknown;P:unknown;C:unknownC.G.S.X.
0.001e+038At4g35420829695dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAVC.G.S.X.
0.001e+038At3g63140825489CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.C.G.S.X.
0.001e+038At3g57400824907unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PC.G.S.X.
0.001e+038At3g04110819566GLR1.1 (GLUTAMATE RECEPTOR 1.1)putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.C.G.S.X.
0.001e+038At3g45710823713proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.058e-965Glycine maxGmaAffx.82108.1.S1_atBE474161--4e-10At5g24740-C.G.S.X.
0.004e-242Hordeum vulgareContig16139_atContig16139--9e+0At5g34882-C.G.S.X.
0.023e-1587Oryza sativaOsAffx.28988.1.S1_at---0C.G.S.X.
0.133e-42176Populus trichocarpaPtpAffx.201432.1.S1_atpmrna2828--2e-42At5g24740-C.G.S.X.
0.011e-657Triticum aestivumTa.8446.1.S1_atBQ161908--2e+0At2g24600ankyrin repeat family proteinC.G.S.X.
0.004e-138Vitis vinifera1608631_s_atCB339837hypothetical protein LOC100251454-5e+0Atmg01100-C.G.S.X.
0.004e-242Zea maysZm.8987.1.A1_a_atCK347996hypothetical protein LOC100192764 /// vacuolar protein sorting 29-3e-15At3g47810MAG1 (MAIGO 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008104Any process by which a protein is transported to, or maintained in, a specific location.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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