CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g24660

Gene name LSU2 (RESPONSE TO LOW SULFUR 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At5g24660 832538 LSU2 (RESPONSE TO LOW SULFUR 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.75 86.9 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM S.X. H.G.
0.72 84.8 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.70 83.5 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.70 83.5 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF S.X. H.G.
0.70 83.5 At2g01610 814690 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.64 78.9 At1g36240 840530 60S ribosomal protein L30 (RPL30A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB S.X. H.G.
0.58 73.8 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P S.X. H.G.
0.58 73.8 At5g11410 831012 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.50 65.3 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
175.5 100.0 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
164.2 99.9 E-MEXP-1797-raw-cel-1669768066
153.4 99.9 E-ATMX-13-raw-cel-1556149807
152.1 99.9 E-MEXP-1797-raw-cel-1669768012
144.3 99.9 E-ATMX-31-raw-cel-1516947916
143.4 99.9 E-MEXP-1797-raw-cel-1669767940
143.3 99.9 E-ATMX-13-raw-cel-1556149919
139.9 99.9 E-MEXP-1797-raw-cel-1669768030
128.7 99.9 E-ATMX-13-raw-cel-1556149871
128.1 99.9 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.86 4e-82 303 At5g24655 832537 LSU4 (RESPONSE TO LOW SULFUR 4) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.72 1e-26 119 At3g49570 824119 LSU3 (RESPONSE TO LOW SULFUR 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.04 3e-2 38 At3g54630 824628 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.02 3e-2 38 At3g24600 822056 - F:unknown;P:antigen processing and presentation;C:MHC class I protein complex, membrane;P C.G. S.X.
0.01 1e-1 36 At5g15700 831424 DNA-directed RNA polymerase (RPOT2) F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:unknown;OFPMVB C.G. S.X.
0.03 1e-1 36 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB C.G. S.X.
0.01 1e-1 36 At1g75820 843915 CLV1 (CLAVATA 1) Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. C.G. S.X.
0.04 1e-1 36 At1g05070 839330 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PBO C.G. S.X.
0.00 5e-1 34 At5g24740 832543 - F:unknown;P:protein localization;C:unknown;MOFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 8e-4 44 Glycine max GmaAffx.25124.1.S1_at AW706312 - - 1e-3 At5g24660 LSU2 (RESPONSE TO LOW SULFUR 2) C.G. S.X.
0.04 3e-1 34 Hordeum vulgare HVSMEg0009L14r2_at HVSMEg0009L14r2 - - 1e+0 At5g24660 LSU2 (RESPONSE TO LOW SULFUR 2) C.G. S.X.
0.04 3e-1 36 Oryza sativa Os03g0609100 9631.m03970 - - 3e-2 At1g50650 stigma-specific Stig1 family protein C.G. S.X.
0.05 7e-1 34 Populus trichocarpa PtpAffx.56195.1.A1_at CV274483 hypothetical protein - 3e+0 At2g41945 unknown protein C.G. S.X.
0.06 2e+0 32 Triticum aestivum TaAffx.110102.1.S1_at CA663946 - - 6e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) C.G. S.X.
0.06 4e-2 36 Vitis vinifera 1613229_s_at CB977360 hypothetical protein LOC100262569 - 6e-1 At1g63535 - C.G. S.X.
0.05 9e-1 32 Zea mays ZmAffx.154.1.A1_at AI668116 - - 3e+0 At5g24655 LSU4 (RESPONSE TO LOW SULFUR 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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