Gene omics information

Query gene ID At5g24380
Gene name YSL2 (YELLOW STRIPE LIKE 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g24380832509YSL2 (YELLOW STRIPE LIKE 2)closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1S.X.H.G.
0.2522.6At1g67410843061exostosin family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBFS.X.H.G.
0.2522.6At2g37570818333SLT1 (sodium- and lithium-tolerant 1)encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene.S.X.H.G.
0.2319.3At3g26730822285zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:chloroplast;OMFPBVAS.X.H.G.
0.103.4At5g18830832001SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7)Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c.S.X.H.G.
0.010.2At5g07270830618ankyrin repeat family proteinF:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
209.8100.0GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
196.8100.0GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
93.199.9GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
70.399.9GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
66.899.8GSM133965Fukuda_1-10_8B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
55.599.8GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
32.899.7GSM131381AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1GSE5625AtGenExpress: Stress Treatments (Genotoxic stress)
30.999.7GSM184846Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with salt
29.699.7GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
29.299.7GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.251e-1275At5g53550835437YSL3 (YELLOW STRIPE LIKE 3)F:oligopeptide transporter activity;P:oligopeptide transport, response to nematode;C:unknown;BPFOAVC.G.S.X.
0.113e-757At4g24120828512YSL1 (YELLOW STRIPE LIKE 1)Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1).C.G.S.X.
0.037e-550At3g27020822319YSL6 (YELLOW STRIPE LIKE 6)Arabidopsis thaliana metal-nicotianamine transporter YSL6C.G.S.X.
0.031e-346At5g41000834102YSL4 (YELLOW STRIPE LIKE 4)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.046e-240At1g48370841257YSL8 (YELLOW STRIPE LIKE 8)Arabidopsis thaliana metal-nicotianamine transporter YSL4C.G.S.X.
0.013e-138At5g51120835186PABN1 (POLYADENYLATE-BINDING PROTEIN 1)Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.C.G.S.X.
0.033e-138At3g17650821032YSL5 (YELLOW STRIPE LIKE 5)Arabidopsis thaliana metal-nicotianamine transporter YSL5C.G.S.X.
0.013e-138At2g26100817150galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:chloroplast, membrane;MPOBC.G.S.X.
0.013e-138At1g60720842366-F:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.144e-1377Glycine maxGma.15578.1.S1_atCD414652--2e-15At5g53550YSL3 (YELLOW STRIPE LIKE 3)C.G.S.X.
0.092e-963Hordeum vulgareContig19081_atContig19081--2e-3At5g53550YSL3 (YELLOW STRIPE LIKE 3)C.G.S.X.
0.119e-963Oryza sativaOs04g0542200AK120923.1-Oligopeptide transporter OPT superfamily protein6e-9At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
0.082e-1275Populus trichocarpaPtpAffx.29140.1.S1_atDN496765oligopeptide transporter OPT family-6e-13At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
0.041e+036Triticum aestivumTa.5463.1.A1_atBJ283707--1e-15At3g27020YSL6 (YELLOW STRIPE LIKE 6)C.G.S.X.
0.112e-24113Vitis vinifera1617609_atCF207468hypothetical protein LOC100255514-3e-24At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
0.071e-138Zea maysZm.582.1.S1_atAF186234.2yellow stripe1-3e-1At5g24380YSL2 (YELLOW STRIPE LIKE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006826The directed movement of iron (Fe) ions into, out of, within or between cells.
XGO:0010039A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
XGO:0010043A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
CGO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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