Gene omics information

Query gene ID At5g24290
Gene name integral membrane family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At5g24290832496integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAS.X.H.G.
0.6781.6At1g62660842563beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolarF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:vacuole;BPFOMAS.X.H.G.
0.6378.1At4g21600828246ENDO5 (endonuclease 5)Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).S.X.H.G.
0.5570.6At5g18860832004inosine-uridine preferring nucleoside hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFAS.X.H.G.
0.4862.5At3g16460820894jacalin lectin family proteinF:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVAS.X.H.G.
0.4457.2At2g36380818211PDR6F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVS.X.H.G.
0.4253.9At1g50560841477CYP705A25member of CYP705AS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
59.299.8GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
34.499.7GSM142671SF001_ATH1_A1-Fille-WT-nodexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
24.799.6GSM133983Birnbaum_1-13_StageIII-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
24.499.6GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
23.799.6GSM142672SF001_ATH1_A2-Fille-WT-+dexGSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
22.599.6GSM142673SF001_ATH1_A3-Fille-ANGR4-12GSE6155Nutritional control of plant development: molecular analysis of the NO3- response pathway in Arabidopsis roots.
22.599.6GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
21.199.6GSM142752MJ001_ATH1_A3-jones-rh1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-240At5g16680831529PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MOFBPVAC.G.S.X.
0.015e-240At4g31980829328unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBC.G.S.X.
0.012e-138At5g56270835726WRKY2WRKY transcription factor 2C.G.S.X.
0.012e-138At3g14270820647phosphatidylinositol-4-phosphate 5-kinase family proteinEncodes a FYVE domain protein containing the following domains: FYVE + Chaperonin + PIP5K.C.G.S.X.
0.012e-138At2g35630818131MOR1 (MICROTUBULE ORGANIZATION 1)Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity.C.G.S.X.
0.018e-136At5g639908365203'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putativeF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:cellular_component unknown;BOFPMAC.G.S.X.
0.018e-136At5g05860830471UGT76C2F:in 6 functions;P:metabolic process;C:unknown;PMBVOFC.G.S.X.
0.018e-136At5g41460834147fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;MPFOC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxGmaAffx.56390.1.S1_atBU927504--9e-7At3g10530transducin family protein / WD-40 repeat family proteinC.G.S.X.
0.026e-342Hordeum vulgareContig6939_atContig6939--2e-1At5g16030unknown proteinC.G.S.X.
0.024e-138Oryza sativaOsAffx.13451.1.A1_at---0C.G.S.X.
0.022e-242Populus trichocarpaPtpAffx.211989.1.S1_atpmrna23546hypothetical protein-2e-3At2g28660copper-binding family proteinC.G.S.X.
0.029e-136Triticum aestivumTa.12048.1.A1_atBQ171480--7e-1At1g17370UBP1B (oligouridylate binding protein 1B)C.G.S.X.
0.022e-136Vitis vinifera1618492_atCA808590--1e-1At1g09070SRC2 (SOYBEAN GENE REGULATED BY COLD-2)C.G.S.X.
0.014e-136Zea maysZm.13076.1.A1_atBQ703993--2e+0At1g07350transformer serine/arginine-rich ribonucleoprotein, putativeC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage