CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g24280

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At5g24280 832495 - F:unknown;P:unknown;C:unknown;PMOBF S.X. H.G.
0.67 81.6 At5g48720 834930 XRI1 (X-RAY INDUCED TRANSCRIPT 1) Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. S.X. H.G.
0.50 65.3 At4g02390 828049 APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE) Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification . S.X. H.G.
0.44 57.2 At5g03780 831726 TRFL10 (TRF-LIKE 10) Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. S.X. H.G.
0.22 17.5 At1g36180 840522 ACC2 (ACETYL-COA CARBOXYLASE 2) acetyl-CoA carboxylase 2 (ACC2) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
137.5 99.9 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
132.9 99.9 GSM131375 AtGen_6-5511_Genotoxicstress-Shoots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
118.8 99.9 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
110.5 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
105.5 99.9 GSM131381 AtGen_6-5621_Genotoxicstress-Roots-24.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
93.6 99.9 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
92.8 99.9 GSM131382 AtGen_6-5622_Genotoxicstress-Roots-24.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
86.8 99.9 GSM131378 AtGen_6-5522_Genotoxicstress-Roots-12.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
79.2 99.9 GSM131377 AtGen_6-5521_Genotoxicstress-Roots-12.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
77.4 99.9 GSM10441 WT Ovule 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 42 At5g11430 831014 zinc ion binding F:zinc ion binding;P:transcription;C:nucleus;MFOPB C.G. S.X.
0.01 4e-2 42 At4g14365 827080 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.01 4e-2 42 At2g23100 816842 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVA C.G. S.X.
0.01 2e-1 40 At5g41315 834133 GL3 (GLABROUS 3) encodes a basic helix loop helix domain protein that interacts with GL1 in trichome development. C.G. S.X.
0.01 2e-1 40 At4g02220 828106 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein F:zinc ion binding;P:unknown;C:cytoplasm;MOFP C.G. S.X.
0.01 2e-1 40 At1g21326 838731 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.01 6e-1 38 At5g44050 834428 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA C.G. S.X.
0.01 6e-1 38 At3g32160 822980 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 6e-1 38 At3g49740 824136 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:unknown;POFMB C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-1 38 Glycine max GmaAffx.79548.1.A1_at CD407461 - - 7e-1 At5g57000 unknown protein C.G. S.X.
0.01 3e-1 38 Hordeum vulgare EBro08_SQ004_E04_at EBro08_SQ004_E04 - - 3e-3 At1g67195 MIR414 (MICRORNA 414) C.G. S.X.
0.01 3e-1 40 Oryza sativa Os08g0422100 9636.m03260 - - 9e-1 At4g00940 Dof-type zinc finger domain-containing protein C.G. S.X.
0.03 4e-6 56 Populus trichocarpa PtpAffx.210283.1.S1_at pmrna20227 hypothetical protein - 1e-6 At5g24280 - C.G. S.X.
0.01 6e-1 38 Triticum aestivum TaAffx.112673.1.S1_at CA622045 - - 3e-1 At1g32337 unknown protein C.G. S.X.
0.01 2e-1 38 Vitis vinifera 1620536_at CF200887.1 - - 7e-2 At3g49630 2-oxoacid-dependent oxidase, putative C.G. S.X.
0.01 1e+0 36 Zea mays Zm.9120.1.A1_at BM348766 - - 9e-2 At3g25572 CPuORF11 (Conserved peptide upstream open reading frame 11) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage