CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g24210

Gene name lipase class 3 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At5g24210 832488 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PO S.X. H.G.
0.67 81.6 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P S.X. H.G.
0.67 81.6 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO S.X. H.G.
0.67 81.6 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA S.X. H.G.
0.29 30.3 At2g04450 814985 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6) F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.7 99.8 E-TABM-62-raw-cel-720977011
32.7 99.7 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
32.0 99.7 GSM134422 St.Clair_1-119_378_Van-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
31.8 99.7 E-TABM-62-raw-cel-720983113
30.9 99.7 E-TABM-62-raw-cel-720984082
28.7 99.7 GSM134404 St.Clair_1-101_324_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
27.5 99.7 E-TABM-62-raw-cel-720982137
26.8 99.7 GSM134421 St.Clair_1-118_348_Van-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5756 Expression Level Polymorphism Project (ELP) - Van-0
25.4 99.6 GSM128677 Underwood_1-30_DC3000-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
25.4 99.6 GSM128664 Underwood_1-18_Cor-hrpS-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.53 4e-48 192 At5g24200 832487 triacylglycerol lipase F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PM C.G. S.X.
0.10 6e-7 56 At5g24220 832489 lipase class 3-related F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;P C.G. S.X.
0.10 5e-4 46 At5g24180 832485 lipase class 3-related F:unknown;P:unknown;C:cellular_component unknown;PF C.G. S.X.
0.10 2e-3 44 At5g24230 832490 - F:unknown;P:unknown;C:cellular_component unknown;PFM C.G. S.X.
0.07 5e-1 36 At5g24190 832486 - F:unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.02 5e-1 36 At4g10955 826695 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At5g50380 835106 ATEXO70F1 (exocyst subunit EXO70 family protein F1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.01 2e+0 34 At4g39350 830090 CESA2 (CELLULOSE SYNTHASE A2) Encodes a cellulose synthase isomer, related to CESA6. C.G. S.X.
0.01 2e+0 34 At4g18350 827562 NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max Gma.4637.1.A1_at BI968670 - - 2e-5 At4g10955 lipase class 3 family protein C.G. S.X.
0.02 2e+1 30 Hordeum vulgare HW08F07V_x_at HW08F07V - - 2e+0 At5g06265 hyaluronan mediated motility receptor-related C.G. S.X.
0.02 4e+0 34 Oryza sativa OsAffx.30032.2.S1_at - - - 0 C.G. S.X.
0.02 2e-1 38 Populus trichocarpa Ptp.3789.1.A1_at CV273218 hypothetical protein - 4e+0 At1g78995 unknown protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.39303.1.S1_at BG909700 - - 1e-2 At3g17600 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) C.G. S.X.
0.02 4e-2 38 Vitis vinifera 1609914_at CF212755 - - 4e-1 At3g06019 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.18107.1.S1_at AY536125.1 meg5 protein - 3e-1 At5g22190 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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