CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g24140

Gene name SQP2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.45 58.3 At5g24140 832479 SQP2 Encodes a protein with similarity to squalene monoxygenases. S.X. H.G.
0.80 89.8 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV S.X. H.G.
0.78 88.6 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
0.78 88.6 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
0.74 86.1 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB S.X. H.G.
0.70 83.5 At5g42590 834266 CYP71A16 putative cytochrome P450 S.X. H.G.
0.70 83.5 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. S.X. H.G.
0.63 78.1 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase S.X. H.G.
0.58 73.8 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
224.3 100.0 E-MEXP-722-raw-cel-1062243516
141.5 99.9 E-MEXP-722-raw-cel-1062243559
135.0 99.9 E-MEXP-722-raw-cel-1062243470
134.1 99.9 E-MEXP-722-raw-cel-1062242948
116.5 99.9 E-MEXP-722-raw-cel-1062243108
111.6 99.9 E-MEXP-722-raw-cel-1062242857
102.1 99.9 GSM133803 Werner_1-4_mutant-24hr-control(j4s)_Rep1_ATH1 GSE5734 Effect of mycotoxin treatment on gene expression of wild-type and an altered sensitivity mutant
96.2 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
89.8 99.9 E-MEXP-722-raw-cel-1062243429
85.2 99.9 E-MEXP-722-raw-cel-1062243314
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.29 1e-39 165 At5g24150 832480 SQP1 squalene monooxygenase gene homolog C.G. S.X.
0.27 7e-35 149 At5g24160 832482 SQE6 (SQUALENE MONOXYGENASE 6) F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPA C.G. S.X.
0.02 1e-2 42 At1g10140 837551 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO C.G. S.X.
0.04 1e-2 42 At1g58440 842213 XF1 Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity. C.G. S.X.
0.02 2e-1 38 At3g26085 822206 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:membrane;BOPA C.G. S.X.
0.03 8e-1 36 At5g24155 832481 squalene monooxygenase, putative / squalene epoxidase, putative F:oxidoreductase activity;P:sterol biosynthetic process;C:endomembrane system;BFPMO C.G. S.X.
0.01 8e-1 36 At4g37850 829941 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-2 40 Glycine max Gma.6225.1.S1_at CD390358 - - 1e-13 At4g37760 SQE3 (squalene epoxidase 3) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig4042_at Contig4042 - - 3e-2 At1g63610 unknown protein C.G. S.X.
0.02 2e+0 36 Oryza sativa OsAffx.21823.2.S1_at - - - 0 C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.41688.1.S1_at DN501795 hypothetical protein - 4e-2 At5g24140 SQP2 C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.2737.3.A1_at CN009726 - - 2e-2 At4g08868 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1618776_x_at CF205279.1 - - 1e+0 At2g03930 - C.G. S.X.
0.02 5e+0 32 Zea mays ZmAffx.707.1.A1_at AI738220 transposon protein - 8e-1 At5g03310 auxin-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0016126 The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00049 Sterol Biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00100 Steroid biosynthesis
01062 Biosynthesis of terpenoids and steroids
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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