Gene omics information

Query gene ID At5g24120
Gene name SIGE (SIGMA FACTOR E)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4862.5At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.S.X.H.G.
0.6075.7At5g42760834285-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMFS.X.H.G.
0.4050.8At4g00050828175UNE10 (unfertilized embryo sac 10)F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFOS.X.H.G.
0.3745.0At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFS.X.H.G.
0.3338.1At5g03555831791permease, cytosine/purines, uracil, thiamine, allantoin family proteinF:nucleobase transmembrane transporter activity;P:nucleobase, nucleoside, nucleotide and nucleic acid transport;C:membrane;BOFAPMS.X.H.G.
0.2624.4At1g78510844187SPS1 (solanesyl diphosphate synthase 1)Encodes a protein with solanesyl diphosphate synthase activity.S.X.H.G.
0.2624.4At4g27030828811small conjugating protein ligaseF:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBVS.X.H.G.
0.2115.8At3g17800821048-mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stemS.X.H.G.
0.146.8At5g50100835074-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
77.599.9GSM297392At.StarchSD.WTSS3.WTR1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
60.599.8E-MEXP-557-raw-cel-879731502
60.199.8GSM297382At.StarchSD.WTSS3.SS3R1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
52.799.8GSM297387At.StarchSD.WTSS3.SS3R2L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
47.299.8Evans_2-2_col-WT-cold_ATH1
43.699.8GSM197146S82-2_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutants
43.399.8GSM197141wt_2 with array type ATH1 from AffymetrixGSE7961affy_aba_ath1-Characterization of aba3-1 suppressor mutants
41.699.8GSM134775Col-0_5day_+lincomycin_rep1GSE5770col0,gun1,abi4-102, w/wo lincomycin
41.699.8Evans_2-8_35s-FAD3-cold_ATH1
40.699.8Evans_2-4_fab1-mut-cold_ATH1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At4g01800827922preprotein translocase secA subunit, putativeF:protein binding, ATP binding;P:intracellular protein transport, protein targeting, protein import;C:chloroplast stroma, chloroplast, chloroplast envelope;OBPMAC.G.S.X.
0.015e-240At3g24330822022glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFBOC.G.S.X.
0.012e-138At4g39170830072SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeF:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFOC.G.S.X.
0.012e-138At4g24970828599ATP-binding region, ATPase-like domain-containing proteinF:ATP binding;P:unknown;C:membrane;MOPBFAC.G.S.X.
0.012e-138At2g21520816691transporterF:transporter activity;P:transport;C:intracellular;MPFOC.G.S.X.
0.012e-138At1g50840841506POLGAMMA2 (polymerase gamma 2)DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation.C.G.S.X.
0.012e-138At1g32440840138PKp3 (plastidial pyruvate kinase 3)encodes a chloroplast pyruvate kinase beta subunit. The enzyme is less active than the other chloroplast pyruvate kinase beta subunit encoded by AT5G52920. Involved in seed oil biosynthesis. Can partially complement the AT5G52920 mutant.C.G.S.X.
0.012e-138At1g21080838704DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.246e-21103Glycine maxGma.17492.1.S1_atCD398389--2e-21At5g24120SIGE (SIGMA FACTOR E)C.G.S.X.
0.024e-136Hordeum vulgareContig5365_s_atContig5365--4e-1At5g24120SIGE (SIGMA FACTOR E)C.G.S.X.
0.021e-140Oryza sativaOs05g0492100AK103698.1-Conserved hypothetical protein2e-3At1g72150PATL1 (PATELLIN 1)C.G.S.X.
0.276e-33143Populus trichocarpaPtpAffx.218279.1.S1_atpmrna33833hypothetical protein-4e-33At5g24120SIGE (SIGMA FACTOR E)C.G.S.X.
0.028e-136Triticum aestivumTa.19141.1.S1_atCA647806--1e-1At5g24120SIGE (SIGMA FACTOR E)C.G.S.X.
0.202e-26119Vitis vinifera1616946_atCF518803hypothetical protein LOC100250120-4e-26At5g24120SIGE (SIGMA FACTOR E)C.G.S.X.
0.021e+034Zea maysZm.12351.1.A1_atBQ779084HEC/Ndc80p family protein-2e+0At5g08391unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009637A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm.
XGO:0010114A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
XGO:0010218A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
SGO:0006352Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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