CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g24110

Gene name WRKY30

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At5g24110 832476 WRKY30 member of WRKY Transcription Factor; Group III S.X. H.G.
1.00 100.0 At1g14540 838016 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
1.00 100.0 At1g22810 838887 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
0.89 94.6 At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV S.X. H.G.
0.89 94.6 At2g37430 818319 zinc finger (C2H2 type) family protein (ZAT11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
680.2 100.0 E-MEXP-807-raw-cel-1173273223
611.4 100.0 E-MEXP-807-raw-cel-1173273252
606.0 100.0 E-MEXP-807-raw-cel-1173273170
373.8 100.0 E-MEXP-807-raw-cel-1173273060
321.1 100.0 E-MEXP-807-raw-cel-1173273116
310.9 100.0 E-MEXP-807-raw-cel-1173273144
239.9 100.0 E-MEXP-807-raw-cel-1173273196
146.8 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
138.2 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
122.0 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At2g15240 816013 UNC-50 family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPO C.G. S.X.
0.03 1e-1 38 At3g54430 824609 SRS6 (SHI-RELATED SEQUENCE 6) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. C.G. S.X.
0.02 1e-1 38 At3g03330 821281 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, plasma membrane;BOMFPAV C.G. S.X.
0.05 1e-1 38 At3g01970 821270 WRKY45 member of WRKY Transcription Factor; Group I C.G. S.X.
0.02 1e-1 38 At2g37260 818303 TTG2 (TRANSPARENT TESTA GLABRA 2) Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent. C.G. S.X.
0.02 1e-1 38 At1g06560 837167 NOL1/NOP2/sun family protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP C.G. S.X.
0.01 4e-1 36 At5g23630 832428 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase familiy protein A novel member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-12 73 Glycine max GmaAffx.86377.1.S1_at BG406476 WRKY55 protein - 2e-12 At5g24110 WRKY30 C.G. S.X.
0.03 6e-5 48 Hordeum vulgare Contig12005_at Contig12005 - - 2e-4 At5g24110 WRKY30 C.G. S.X.
0.04 2e-7 57 Oryza sativa Os06g0158100 9634.m00564 - WRKY transcription factor 63 2e-7 At5g24110 WRKY30 C.G. S.X.
0.07 7e-10 65 Populus trichocarpa PtpAffx.210225.1.S1_at pmrna20137 hypothetical protein - 4e-2 At4g11070 WRKY41 C.G. S.X.
0.04 8e-3 42 Triticum aestivum TaAffx.91377.1.S1_at BJ322852 WRKY3 transcription factor - 3e-8 At2g44745 WRKY family transcription factor C.G. S.X.
0.03 9e-3 40 Vitis vinifera 1609130_at BQ799620 hypothetical protein LOC100260212 - 2e-21 At5g49520 WRKY48 C.G. S.X.
0.04 3e-6 52 Zea mays Zm.18098.1.A1_at CK347304 - - 7e-6 At5g24110 WRKY30 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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