CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g24090

Gene name acidic endochitinase (CHIB1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g24090 832474 acidic endochitinase (CHIB1) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO S.X. H.G.
0.60 75.7 At1g70300 843366 KUP6 potassium transporter S.X. H.G.
0.55 70.6 At1g30650 839945 WRKY14 member of WRKY Transcription Factor; Group II-e S.X. H.G.
0.33 38.1 At2g36380 818211 PDR6 F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV S.X. H.G.
0.28 30.3 At1g31120 839997 KUP10 potassium transporter S.X. H.G.
0.27 26.2 At2g26650 817206 AKT1 (ARABIDOPSIS K TRANSPORTER 1) Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. S.X. H.G.
0.24 20.7 At5g63930 836514 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.13 5.8 At2g16790 816180 shikimate kinase family protein F:shikimate kinase activity, kinase activity, ATP binding;P:carbohydrate metabolic process;C:cellular_component unknown;BOFMPA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
112.3 99.9 GSM133958 Fukuda_1-3_2A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
103.5 99.9 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
75.1 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
68.4 99.9 E-ATMX-31-raw-cel-1516948001
64.8 99.8 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
60.9 99.8 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
58.0 99.8 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
57.3 99.8 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
56.6 99.8 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
55.5 99.8 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-1 36 At5g24630 832534 BIN4 (brassinosteroid-insensitive4) This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells. C.G. S.X.
0.01 4e-1 36 At4g39510 830105 CYP96A12 member of CYP96A C.G. S.X.
0.02 4e-1 36 At1g22280 838835 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:nucleus, plasma membrane;PMOBFVA C.G. S.X.
0.01 4e-1 36 At1g27170 839606 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-7 56 Glycine max Gma.9221.1.S1_at CD395134 - - 1e+0 At2g20480 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig25268_at Contig25268 - - 3e+0 At5g24090 acidic endochitinase (CHIB1) C.G. S.X.
0.07 6e-2 40 Oryza sativa Os01g0860500 AB003195.1 - Chitinase (EC 3.2.1.14) 4e-2 At5g24090 acidic endochitinase (CHIB1) C.G. S.X.
0.20 3e-12 73 Populus trichocarpa Ptp.7132.1.S1_at CV273784 hypothetical protein - 3e-12 At5g24090 acidic endochitinase (CHIB1) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.70944.1.S1_at BG606917 - - 4e-1 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.24 4e-14 77 Vitis vinifera 1618373_at Z68123.1 acidic chitinase - 2e-13 At5g24090 acidic endochitinase (CHIB1) C.G. S.X.
0.04 8e-1 34 Zea mays Zm.18267.1.A1_at AY222838.1 - - 2e+0 At5g59845 gibberellin-regulated family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00520 Amino sugar and nucleotide sugar metabolism
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage